PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 265aa MW: 28391.9 Da PI: 5.6168

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g080290.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.5	1.1e-15	99	146	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r ++ +g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+ +l+g Solyc08g080290.2.1 99 FRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAAMALKG 146 899.55.6*****843...5*********************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	3.6E-25	98	154	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.44	98	154	IPR001471	AP2/ERF domain
SMART	SM00380	2.3E-26	98	162	IPR001471	AP2/ERF domain
Pfam	PF00847	2.7E-9	99	146	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.03E-17	99	155	IPR016177	DNA-binding domain
CDD	cd00018	4.32E-15	99	154	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MADSQNSTKS TQIIQPPNQS SESTKIPFNT TLPPPLPPLP PPPAPPETHI QITNTLSSKL 60 ENTNTTPKTV IIPTAIMSST SSSGLGSPSR SIGGKHAVFR GIRCRSGKWV SEIREPRKTT 120 RIWLGTYPTP EMAAAAYDVA AMALKGNDAV INFPGNINSY PSLPPSPAAA DIRKAAATAA 180 ALMKIESGET TSGTQPGTDD HRSLGNVHMM ETRDHEYIDE EALFDMPNLL VDMAEAMMVS 240 PPRMSSPRSD DSPEHSDAEN LWSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-15	89	158	5	76	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.11301	0.0	callus

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	5894154	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g080290.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010811	0.0	Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0019O09, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004245652.1	0.0	ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	7e-50	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A3Q7HTS9	0.0	A0A3Q7HTS9_SOLLC; Uncharacterized protein
STRING	Solyc08g080290.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA553	22	110
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	7e-33	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc08g080290.2.1
Entrez Gene	101246746

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]