PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g080120.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TALE | ||||||||
Protein Properties | Length: 311aa MW: 35307.6 Da PI: 6.5118 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.5 | 9.7e-08 | 259 | 292 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Solyc08g080120.2.1 259 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 292 469*****************************87 PP | |||||||
2 | ELK | 26.3 | 1.8e-09 | 213 | 234 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ Solyc08g080120.2.1 213 ELKIELKQGFRSRIEDVREEIL 234 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 7.7E-19 | 43 | 87 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.5E-17 | 45 | 86 | IPR005540 | KNOX1 |
SMART | SM01256 | 6.8E-25 | 102 | 157 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.1E-18 | 106 | 156 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.184 | 213 | 233 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.677 | 233 | 296 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-16 | 235 | 300 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.4E-10 | 235 | 300 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.62E-11 | 236 | 297 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-25 | 240 | 298 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-17 | 253 | 292 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MQQEEGGLGL MGSSNTSGLG GGDISSMMIS SEDHHNRNLN HYNQLKSEIA THPLYEQLLS 60 AHVACLRVAT PIDQLPLIDA QLTQSHNLLR SYASSQQQQQ QHSLSHHERQ ELDNFLAQYL 120 LVLCSFKEQL QQHVRVHAVE AVMACREIEQ NLQLLTGATL GEGTGATMSD DEDELQMDFS 180 LDVSGGDAHD LMGMGFGLPT ESERSLMERV RQELKIELKQ GFRSRIEDVR EEILRKRRAG 240 KLPGDTTTVL KNWWQQHSKW PYPTEDDKAK LVEETGLQLK QINNWFINQR KRNWHSNSQS 300 VTSLKSKRKR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 2e-12 | 236 | 292 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 289 | 309 | RKRNWHSNSQSVTSLKSKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.3570 | 0.0 | flower| fruit| leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g080120.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001298112.1 | 0.0 | homeobox 2 protein | ||||
Swissprot | Q9FPQ8 | 1e-164 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | A0A3Q7IPR5 | 0.0 | A0A3Q7IPR5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g080120.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6773 | 23 | 29 | Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-148 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g080120.2.1 |
Entrez Gene | 544030 |
Publications ? help Back to Top | |||
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