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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Solyc08g080120.2.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
TALE |
| Protein Properties |
Length: 311aa MW: 35307.6 Da PI: 6.5118 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc08g080120.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 23.5 | 9.7e-08 | 259 | 292 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54
k +yp+++++++L +++gL+ +q+ +WF N+R +
Solyc08g080120.2.1 259 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 292
469*****************************87 PP
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| 2 | ELK | 26.3 | 1.8e-09 | 213 | 234 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK +L++++++++ ++++E++
Solyc08g080120.2.1 213 ELKIELKQGFRSRIEDVREEIL 234
9*******************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010089 | Biological Process | xylem development |
| GO:0010192 | Biological Process | mucilage biosynthetic process |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MQQEEGGLGL MGSSNTSGLG GGDISSMMIS SEDHHNRNLN HYNQLKSEIA THPLYEQLLS 60
AHVACLRVAT PIDQLPLIDA QLTQSHNLLR SYASSQQQQQ QHSLSHHERQ ELDNFLAQYL 120
LVLCSFKEQL QQHVRVHAVE AVMACREIEQ NLQLLTGATL GEGTGATMSD DEDELQMDFS 180
LDVSGGDAHD LMGMGFGLPT ESERSLMERV RQELKIELKQ GFRSRIEDVR EEILRKRRAG 240
KLPGDTTTVL KNWWQQHSKW PYPTEDDKAK LVEETGLQLK QINNWFINQR KRNWHSNSQS 300
VTSLKSKRKR *
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 289 | 309 | RKRNWHSNSQSVTSLKSKRKR |
| Functional Description ? help
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| Source |
Description |
| UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT1G62990.1 | 1e-148 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
Plant Physiol., 2008. 147(3): p. 1004-16
[PMID:18467456] - Heyndrickx KS,Vandepoele K
Systematic identification of functional plant modules through the integration of complementary data sources.
Plant Physiol., 2012. 159(3): p. 884-901
[PMID:22589469] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - He JB, et al.
KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
J Integr Plant Biol, 2018. 60(6): p. 514-528
[PMID:29393579]
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