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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc08g079800.2.1 |
Common Name | LOC101243919 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
GRF |
Protein Properties |
Length: 219aa MW: 24785.6 Da PI: 8.7798 |
Description |
GRF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc08g079800.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRC | 72.7 | 4.1e-23 | 111 | 153 | 1 | 43 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43
++epgrC+RtDGKkWRCs+ v++++k+CE+H+hrgr+rsrk +
Solyc08g079800.2.1 111 EPEPGRCKRTDGKKWRCSKGVVQNQKYCEKHMHRGRQRSRKCM 153
69**************************************965 PP
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2 | QLQ | 42 | 2.9e-15 | 50 | 84 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
FT Q q+L++Q +yKy+ a++PvP +L+ +i+k
Solyc08g079800.2.1 50 FTFLQRQELEQQFIIYKYIEAGLPVPTHLIIPIYK 84
9999*****************************86 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 219 aa
Download sequence Send
to blast |
MELKISPPKS IATKKVCYNV SDGGEKCSIE LGFKNLELSY SNFSTNGYGF TFLQRQELEQ 60 QFIIYKYIEA GLPVPTHLII PIYKSFTCSL KGLHDVMGYG HVCWEHKSRM EPEPGRCKRT 120 DGKKWRCSKG VVQNQKYCEK HMHRGRQRSR KCMELTNSTD ICCSDSSKIL SQSCQILQKC 180 ATGKVSDMQP LIFLKSLNNI DHNSEPDTTT LSIGLPMN*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 144 | 152 | GRQRSRKCM |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP009276 | 0.0 | Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0165B06, complete sequence |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]
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