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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc08g079100.2.1 |
| Common Name | LOC101247051 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
YABBY |
| Protein Properties |
Length: 217aa MW: 24172.2 Da PI: 7.6678 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc08g079100.2.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 220.9 | 3.8e-68 | 17 | 179 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekeesasts 95
seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll l ++ + h s ++ll+e +++ n+ +n++++ ++ +
Solyc08g079100.2.1 17 PSEQLCYVHCNVCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPGWLLPSTnHHHHHFGHTYFSPSHNLLDEISNATPNFLMNQSNSAHEFVQ 107
68***************************************95544433133333333333333347777777777777776666666666 PP
YABBY 96 vsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
++ + +++pr+pp v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl
Solyc08g079100.2.1 108 LPA----RPGFDDLPRPPPvVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIQFGL 179
655....55788999999989*****************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 217 aa
Download sequence Send
to blast |
MSSSNSLSLD HLPPPPPSEQ LCYVHCNVCD TVLAVSVPCT SLFKTVTVRC GHCTNLLPGW 60
LLPSTNHHHH HFGHTYFSPS HNLLDEISNA TPNFLMNQSN SAHEFVQLPA RPGFDDLPRP 120
PPVVNRPPEK RQRVPSAYNR FIKEEIQRIK AGNPDISHRE AFSAAAKNWA HFPHIQFGLM 180
PDQTVKRTNV RQQDGEDVLT KDGLFNTSAN VSVSPY*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Preferentially expressed in immature organs containing meristems and organ primordia. Expressed in phloem of developing vascular tissues of young seedling shoots. Expressed in the phloem of midvein vasculature of young leaves. Does not show polar expression pattern in leaf primordia. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17676337}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Yang C,Ma Y,Li J
The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
J. Exp. Bot., 2016. 67(18): p. 5545-5556
[PMID:27578842]
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