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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Solyc08g077960.2.1 |
| Common Name | LOC101246747 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
GATA |
| Protein Properties |
Length: 539aa MW: 60252.4 Da PI: 7.314 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc08g077960.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 49.4 | 6.1e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+
Solyc08g077960.2.1 7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41
****************66666***********997 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding |
| GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| GO:0003682 | Molecular Function | chromatin binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 539 aa
Download sequence Send
to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLINYTPLHA RAEPDDLEDY 60
RVSRFKNFTV KNKEVKMLKR KKSHDNPEIG ILPEYHQGFH RKALDEDTSN RSSSGSAVSN 120
TESYGQFGSA EASDLTGPAQ SNIWDATVPS RKRTCVNRPK QSSVEKLTKD LYTILHEQQS 180
SYFSGSSEED LLFESDKPMV SVEIGHGSVL IRHPSSIGRE EESEASSLSV DNKHHSSNEA 240
YSQLTTPPVN ISKGVNSSNL VIQRTQKPTV QGVEHEQFKR SKDHLEKLQI LGHHNSPLCH 300
IDLKDVLNYE EFTRHLSSDE QQQLLKYLPP VDSFSPPESL RSMFESSQFE ENLSSFQKLL 360
AEGVFDNSLS GVTVEECRNL KRFMLCYLMK SKWVEQVNLL KDMKCKNSSS SSEVAGGRNV 420
FGTGHSVNMK RPRDGQHPKN LGVNTTMKSP KRVAMKNSYE QQKEIMENDG SCFSPKSLFA 480
LPSENSFRFT NESSDQDLLL DVPSNSSFPQ AELLLPTASF AAQASTSSSS IYPHLIHP*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
