PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 326aa MW: 36973.3 Da PI: 7.1323

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g076710.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60	5e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+l d++++ G +W +I+++ g++R++k+c++rw +yl Solyc08g076710.2.1 15 KGPWTSEEDEKLMDYITKNGHTNWQLIPKKAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	51.9	1.8e-16	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ eE+e++++++ +lG++ W++Ia +++ gRt++++k++++++l Solyc08g076710.2.1 68 RGEFSIEEEEIIINLHSLLGNK-WSKIAGHLP-GRTDNEIKNFYNTHL 113 899*****************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.0E-25	7	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.631	10	66	IPR017930	Myb domain
SuperFamily	SSF46689	1.16E-30	12	109	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-14	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-16	15	62	IPR001005	SANT/Myb domain
CDD	cd00167	2.42E-11	17	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.3E-26	66	117	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.549	67	117	IPR017930	Myb domain
SMART	SM00717	8.1E-15	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-14	68	113	IPR001005	SANT/Myb domain
CDD	cd00167	3.67E-7	81	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MGRYPCCKVD ENLKKGPWTS EEDEKLMDYI TKNGHTNWQL IPKKAGLNRC GKSCRLRWTN 60 YLRPDIKRGE FSIEEEEIII NLHSLLGNKW SKIAGHLPGR TDNEIKNFYN THLRKKLLRL 120 GIDPRTHKPI SDLNLLINLS HQFTSKQNIN HHLMNNPNFP LAYALKLQAQ VTEIAKIQQL 180 VQSLFTPIST NNPLSTKFQE NYFATSSSHV ITNNVATNTH FLNALLVNSC GTIQNLDNSN 240 SCISNSSELS NYQSELNSKV DNFEGLNNNS SKTNLDYNNS LPSLITPSSP DQANDAHVNQ 300 DYDPNTFSQL NHEGIDDSFW NDIFP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-28	12	117	4	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269\|PubMed:8980549}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269\|PubMed:19517001, ECO:0000305\|PubMed:12857823}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g076710.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269\|PubMed:12857823, ECO:0000269\|PubMed:19517001, ECO:0000269\|PubMed:8980549}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010802	0.0	Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0015J19, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004246185.1	0.0	transcription factor MYB41-like
Swissprot	Q9LDR8	1e-69	MY102_ARATH; Transcription factor MYB102
TrEMBL	A0A3Q7HTU8	0.0	A0A3Q7HTU8_SOLLC; Uncharacterized protein
STRING	Solyc08g076710.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	8e-72	myb domain protein 9

Link Out ? help Back to Top
Phytozome	Solyc08g076710.2.1
Entrez Gene	101261056

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615] Zhu L,Guo J,Ma Z,Wang J,Zhou C Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis. Biomolecules, 2019. [PMID:29880735]