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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc08g076700.1.1 |
Common Name | LOC101261353 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MYB |
Protein Properties |
Length: 291aa MW: 33292.8 Da PI: 4.9444 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc08g076700.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 63 | 5.9e-20 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT eEde+lv+++k+ G g+W +I+++ g++R++k+c++rw +yl
Solyc08g076700.1.1 15 KGPWTSEEDEKLVEYIKENGHGNWQLIPKRAGLNRCGKSCRLRWTNYL 62
79********************************************97 PP
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2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++++eE+e++++++ +lG++ W++Ia++++ gRt++++k+ w+++l
Solyc08g076700.1.1 68 RGAFSEEEEEIIINLHSLLGNK-WSKIASHLP-GRTDNEIKNLWNTHL 113
89********************.*********.************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 291 aa
Download sequence Send
to blast |
MGRYPCCKVD EDLKKGPWTS EEDEKLVEYI KENGHGNWQL IPKRAGLNRC GKSCRLRWTN 60 YLRPDIKRGA FSEEEEEIII NLHSLLGNKW SKIASHLPGR TDNEIKNLWN THLKKKLFKS 120 GIDPVTHQPI TDPNLLLSLS NLMNPFESAL RLQAELTEIA KIHIIQNIIQ VLNTPPPTLI 180 PSLQENNYPM QQFYNNNIIA PYDQIITNEP SPISKNLSDN NMIKNSSVFE NNMINNVDYN 240 SEYSSLPSLV PVTPENSVPF DQQIIDMINP SYYDDFCELE KVLNDEANIV *
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP010802 | 0.0 | Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0015J19, complete sequence |