PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc08g076230.1.1

Common Name

BBR/BPC3

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

BBR-BPC

Protein Properties

Length: 220aa MW: 24031.4 Da PI: 10.2948

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g076230.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	197.5	1.5e-60	57	219	135	301
GAGA_bind 135 lpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader........skaekksidlvlngvslDestlPvPvCsCtG 217 ++ ++++ +k+kk++ ++ r+++ k+k+ ++ks++sk + + k+ v s D s+lP P CsCtG Solyc08g076230.1.1 57 FKA-KSQKMKKNKKTSMNGIRETVSELLKEKRFENKSSASK----------KpkgeakcgEATVTKNPSSVYGRASADFSGLPQPFCSCTG 136 111.1111111111111222222222223333322222222..........12233333377788888899999*************** PP GAGA_bind 218 alrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 ++r+CYk G GGWqS+CCtt++S yPLP ++ ++g R agrKmS+ga++klL La+eG+dlsnpvDLkdhWAkHG nkf+t++ Solyc08g076230.1.1 137 VSRRCYKCG-GGWQSSCCTTSLSEYPLPFNPSKPGNRKAGRKMSNGAYNKLLCTLATEGHDLSNPVDLKDHWAKHGSNKFITLK 219 ***99.9*********************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.9E-39	20	219	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.1E-54	41	219	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MASQVNHKEE TFDSHFPWIH RDNFPPATQL GSKSKPCAAV PIRSVAPTGE QNVDVKFKAK 60 SQKMKKNKKT SMNGIRETVS ELLKEKRFEN KSSASKKPKG EAKCGEATVT KNPSSVYGRA 120 SADFSGLPQP FCSCTGVSRR CYKCGGGWQS SCCTTSLSEY PLPFNPSKPG NRKAGRKMSN 180 GAYNKLLCTL ATEGHDLSNP VDLKDHWAKH GSNKFITLK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.25887	0.0	fruit\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in anthers, in pollen grains, in young rosette, in leaf vasculature, in the lateral and primary roots, in embryo sac, and in the whole ovule. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:21435046}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g076230.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009521	0.0	Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0068N03, complete sequence
GenBank	AP010257	0.0	Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0172P19, complete sequence
GenBank	AP010798	0.0	Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0011I05, complete sequence
GenBank	FJ982306	0.0	Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds
GenBank	FJ982307	0.0	Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC3) gene, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001266119.1	1e-163	GAGA-binding transcriptional activator
Swissprot	O82286	2e-46	BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBL	H1ZN90	1e-162	H1ZN90_SOLLC; GAGA-binding transcriptional activator
STRING	Solyc08g076230.1.1	1e-163	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13714	14	15
Representative plant	OGRP2841	13	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	1e-48	basic pentacysteine 7

Link Out ? help Back to Top
Phytozome	Solyc08g076230.1.1
Entrez Gene	101055563

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]