PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRF

Protein Properties

Length: 362aa MW: 39859.1 Da PI: 8.3482

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g075950.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.3	7.3e-25	89	133	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Solyc08g075950.1.1 89 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 133 79****************************************986 PP
2	QLQ	65.5	1.3e-22	28	63	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a++PvPp+L+++i++ Solyc08g075950.1.1 28 PFTAVQWQELEHQAMIYKYLVAGLPVPPDLVVPIRR 63 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.9E-13	27	63	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.5E-17	28	62	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.343	28	63	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.762	89	133	IPR014977	WRC domain
Pfam	PF08879	4.3E-21	90	132	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MSGTSTSVVG GGGGGEGGMG YGYGYRPPFT AVQWQELEHQ AMIYKYLVAG LPVPPDLVVP 60 IRRSFEAISA RFFHHPSLGY CSYYGKKFDP EPGRCRRTDG KKWRCSKDAY PDSKYCERHM 120 HRGRNRSRKP VESQSTPQSL STSMSQITAG SSNTRGSFQN SSSGSFQNMP LYSVANSGTL 180 NYGSTGTKLQ MEPVSYGIDN KDYRYLHGIT PDADEHNLSS EASATVRSLG MRTNTDSTWV 240 LPSQISSSPM ARSKNDSQLL GSSTEMHLPN LLEPMIDATI SKRRHQHCFF GSDIDSPGTV 300 KEEQHSMRPF FNEWPTAKES WSNLDDEGSN KNNFSTTQLS MSIPIAPSNF SSRSACSPND 360 T*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MSGTSTSVVG GGGGGEGGMG YGYGYRPPFT AVQWQELEHQ AMIYKYLVAG LPVPPDLVVP  60
IRRSFEAISA RFFHHPSLGY CSYYGKKFDP EPGRCRRTDG KKWRCSKDAY PDSKYCERHM  120
HRGRNRSRKP VESQSTPQSL STSMSQITAG SSNTRGSFQN SSSGSFQNMP LYSVANSGTL  180
NYGSTGTKLQ MEPVSYGIDN KDYRYLHGIT PDADEHNLSS EASATVRSLG MRTNTDSTWV  240
LPSQISSSPM ARSKNDSQLL GSSTEMHLPN LLEPMIDATI SKRRHQHCFF GSDIDSPGTV  300
KEEQHSMRPF FNEWPTAKES WSNLDDEGSN KNNFSTTQLS MSIPIAPSNF SSRSACSPND  360
T*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g075950.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009262	0.0	Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0006A17, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019070965.2	0.0	growth-regulating factor 4-like
TrEMBL	A0A3Q7HTE3	0.0	A0A3Q7HTE3_SOLLC; Uncharacterized protein
STRING	Solyc08g075950.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA743	23	84
Representative plant	OGRP460	16	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	7e-50	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Solyc08g075950.1.1
Entrez Gene	101267047

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]