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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc08g068540.2.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
B3 |
Protein Properties |
Length: 500aa MW: 56980.4 Da PI: 9.8025 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc08g068540.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 43.5 | 5.6e-14 | 16 | 103 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
+ ++v+ ++l+lp kf++ehg + t+++ ++ W v l +k +++++l +GW+eF + + ++ f++Fk+ ++s+f +v+
Solyc08g068540.2.1 16 IVEPSVMDDRQLRLPDKFVQEHGDE--LLDTVKIIVPTDDFWCVGL--KKAGKMIWLHDGWQEFMEHHSVNCWYFLLFKYGQTSCF--NVH 100
567899999*************865..6679***************..********************************999***..999 PP
EE- CS
B3 96 vfr 98
+f+
Solyc08g068540.2.1 101 IFD 103
987 PP
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2 | B3 | 67.6 | 1.8e-21 | 268 | 358 | 3 | 96 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92
k+l + +v ++ +l +p +f+++++ k +s + l+d++g++W+v++ +++ r++l+kGW +Fv +n L +gD++vF+l ++ + el
Solyc08g068540.2.1 268 KILEKYNVERNYILNIPVEFVRKYMPK--TSELIELQDTDGNKWKVRC--IRRKLRVLLSKGWLNFVTDNSLLVGDVCVFELLKDvQAVEL 354
5565667888899***********855..5679***************..888899*************************9988777777 PP
EEEE CS
B3 93 vvkv 96
+kv
Solyc08g068540.2.1 355 ILKV 358
6665 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 500 aa
Download sequence Send
to blast |
MESCSNSYSA GSFYVIVEPS VMDDRQLRLP DKFVQEHGDE LLDTVKIIVP TDDFWCVGLK 60 KAGKMIWLHD GWQEFMEHHS VNCWYFLLFK YGQTSCFNVH IFDLAATEID YQLRSHGNAK 120 SRDVAQELSH RKDKIVGDKG FTSSIEIVDL LETEQGPESS AKSSELLHRA KRRKIASGKI 180 KITRCYETRS RTNKLHDNGQ LLNAKNLNIS GNGSLTKPVG GKSVRRSIKT PIHSAMATGD 240 TRKSFTSKQR EKSLGRGRYD RRERAQQKIL EKYNVERNYI LNIPVEFVRK YMPKTSELIE 300 LQDTDGNKWK VRCIRRKLRV LLSKGWLNFV TDNSLLVGDV CVFELLKDVQ AVELILKVHM 360 FRNRVEENSK NLHTGSLSEP TLSTGKNCIL QFDESNHTKS SDAFKPLSSD RTNHKTDTEN 420 SFGQQQEKSV VHGSSGNRRK RGRPRDAEAN TDTENSSGQQ EEKSVVHGSL VIVVKEDDQG 480 MQKQTLIQRI HPDSKRRNP*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP009482 | 0.0 | Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0073D06, complete sequence |