PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 219aa MW: 23916.7 Da PI: 5.8372

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g066660.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.7	1.2e-17	30	80	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+++++g Solyc08g066660.1.1 30 PVFRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPNPEMAARAHDVAALSIKG 80 579**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.5E-11	30	80	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-21	31	89	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.537	31	88	IPR001471	AP2/ERF domain
SMART	SM00380	2.2E-33	31	94	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-30	31	89	IPR001471	AP2/ERF domain
CDD	cd00018	2.67E-30	32	90	No hit	No description
PRINTS	PR00367	4.3E-9	32	43	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.3E-9	54	70	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MNSVAAQDNK NAEIISNKSI KRNRDSSKHP VFRGVRMRNW GKWVSEIREP RKKSRIWLGT 60 FPNPEMAARA HDVAALSIKG NSAILNFPEL AGLLPRPATL SPRDIQAAAA KAAAMDKFDD 120 DNNNNNNNND NTSPNNSTSS TSSNMSTSSS LSSLVSAIDL ATSEELTQII ELPKLGTSFE 180 LKNDFVFADC SAMETGWLYP EDGGMISTCF DPSLLWNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-18	26	89	9	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g066660.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004245167.1	1e-159	dehydration-responsive element-binding protein 3-like
Swissprot	Q9LYD3	2e-61	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A3Q7HNL6	1e-158	A0A3Q7HNL6_SOLLC; Uncharacterized protein
STRING	Solyc08g066660.1.1	1e-158	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	1e-57	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc08g066660.1.1
Entrez Gene	101254925

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]