PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g066510.2.1
Common NameLOC101251496
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 360aa    MW: 40265 Da    PI: 6.7917
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g066510.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15.2e-18252286135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Solyc08g066510.2.1 252 CLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRL 286
                         99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.4E-7812341IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.677246282IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-14246283IPR013088Zinc finger, NHR/GATA-type
SMARTSM004011.3E-16246296IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-15247310No hitNo description
CDDcd002021.91E-14251298No hitNo description
PfamPF003207.4E-16252286IPR000679Zinc finger, GATA-type
PROSITE patternPS003440252277IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
METPDFFQTG YYNSSEKQLI SDVKNGEHFV VDDLLDLPND EGMATDDTLD LTVIGNSTDC  60
SVVHNSCNSS LSGSNHHPQS LGYRDFPQGH LSTEFALPYE DMAELEWLSN FVEESFSSNE  120
MHKMQMVQAM RNRTDSEIHQ FIPDPNRASA TSNTIFKPEM PVPAKARSKR SRMAPGNWAS  180
RLLVVSPNTT NPDSSMDTIS VQDMSSSSES GMIIPSSGKK TVKCSSAPKK KENNIHHVPS  240
NNTGSNSEGR KCLHCATDKT PQWRTGPLGP KTLCNACGVR YKSGRLVPEY RPAASPTFML  300
TKHSNSHRKV LEIRRQKEVT QVEHQHQHQF LPHNMMFDVS NADDYLIHQH MGPDFRQLI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g066510.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245156.20.0GATA transcription factor 12
SwissprotP697812e-80GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A3Q7HNI50.0A0A3Q7HNI5_SOLLC; GATA transcription factor
STRINGSolyc08g066510.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.15e-74GATA transcription factor 12
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]