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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc08g065910.1.1 |
| Common Name | LOC101244400 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
MYB |
| Protein Properties |
Length: 214aa MW: 24055.9 Da PI: 6.1311 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc08g065910.1.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 50.3 | 5.4e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
rg W++eEde+l++ + +G++ +W + +++ g++R++k+c++rw++yl
Solyc08g065910.1.1 14 RGQWSPEEDEILKNHIFNHGNPgSWIALPKRAGLNRCGKSCRLRWLNYL 62
89*********************************************97 PP
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| 2 | Myb_DNA-binding | 49.3 | 1.2e-15 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g++T++Ed + + +qlG++ W+ Ia++++ gRt++++k++w++
Solyc08g065910.1.1 69 GNFTQDEDNTICSLYNQLGSR-WSVIASKLP-GRTDNEIKNHWNT 111
79*******************.*********.***********97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 214 aa
Download sequence Send
to blast |
MVRAPCCDKS KVKRGQWSPE EDEILKNHIF NHGNPGSWIA LPKRAGLNRC GKSCRLRWLN 60
YLRPNIKLGN FTQDEDNTIC SLYNQLGSRW SVIASKLPGR TDNEIKNHWN TKLKKKVSAT 120
KEAMKLPIPS SDSADKNMVE TGEKNPRFTQ EEDHSKISPS IEGSTSFETC SSPLDDLAWF 180
ESFFPMDSNT SDGIWSTQQD GIDDFPSDDL LGD*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581}. |
| Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16461581}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP009286 | 0.0 | Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0239G21, complete sequence |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Guo D, et al.
The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
Plant Cell, 2015. 27(11): p. 3112-27
[PMID:26578700] - Pal S, et al.
TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
Plant Physiol., 2017. 175(2): p. 916-926
[PMID:28827455]
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