PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g065420.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TALE
Protein Properties Length: 560aa    MW: 62667.5 Da    PI: 6.7923
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g065420.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.8e-094805181854
                         HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         +F++  ++yp+ +e++ LA k gLt +qV++WF N R +
  Solyc08g065420.2.1 480 MFQNflHPYPKDAEKQLLAVKSGLTRSQVSNWFINARVR 518
                         5887779******************************88 PP
2BELL70.72.6e-23355419671
                BELL   6 qkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                         ++kk  L+ ll+ Vd++Y+q+ +++++vis+F+av++l++  +++++Al++iS  +++L+++i++ 
  Solyc08g065420.2.1 355 EAKKKNLVALLQVVDDQYNQCLDEIHMVISAFHAVTELDP-SIHARFALQTISSLYKNLRERISNY 419
                         79**************************************.9*********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.7E-20281418IPR006563POX domain
PfamPF075261.0E-26287417IPR006563POX domain
PROSITE profilePS5007111.224459522IPR001356Homeobox domain
CDDcd000861.03E-11462523No hitNo description
SMARTSM003895.5E-7462526IPR001356Homeobox domain
SuperFamilySSF466891.55E-15464531IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-26465528IPR009057Homeodomain-like
PfamPF059204.0E-15479518IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MAEPLRIIDE NFLHTTIVPI SFPETVCMNN QNQIMDGHGI PYPFMLQGEA VNTSHGFLNV  60
PNFPRPVDTE AIHNVLPVGR NRIKEYSVST SYPISNAYAD DQYMEGIPIS AVSLANLLAA  120
RNAMHENPEN LAVLAPLSHP TEGQKMDGLD YPNVLNHSFG SYRNYEFDGV SEIGGMVVGR  180
AGSQPFQLTE NVNSNTWFSS ETASLSSDSP SGSSRFSNDL CLSLTTSQSA VACGTTIRDQ  240
CSDISCSGVT NHAFPQRRFD SELTSCNSRN LSLSFGSYKP VYLSQFLTGS RYLRVMQEIL  300
SEIAQLSLQN HNLVGYRGNG TENGANTSFA LNSDAGRGYA AMSSDDSPDG LMGCEAKKKN  360
LVALLQVVDD QYNQCLDEIH MVISAFHAVT ELDPSIHARF ALQTISSLYK NLRERISNYI  420
LAMGEHFNKG GGERGVEKSF ETSFIQKQWA LQQLKRKDHQ LWRPQRGLPE RSVSVLRAWM  480
FQNFLHPYPK DAEKQLLAVK SGLTRSQVSN WFINARVRLW KPMIEEMYAE MNRRKIRAGN  540
EEDHRRNHKI IESHLFTMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A5e-15468525158Homeobox protein Meis1
4xrs_B5e-15468525158Homeobox protein Meis1
5bng_A5e-15468526159Homeobox protein Meis2
5bng_B5e-15468526159Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}.
UniprotTISSUE SPECIFICITY: Most abundant in flowers.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g065420.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0095960.0Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0092J11, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245109.30.0homeobox protein ATH1
SwissprotP487311e-103ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A3Q7HQI50.0A0A3Q7HQI5_SOLLC; Uncharacterized protein
STRINGSolyc08g065420.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82612327
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-105homeobox gene 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]