PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g062200.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Nin-like | ||||||||
Protein Properties | Length: 753aa MW: 84597.1 Da PI: 6.9253 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 60.3 | 3.6e-19 | 256 | 306 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k ++++d + y +l+i++A +L++c+Tv+Kr CR+ G++RWP+Rki+s+ Solyc08g062200.1.1 256 TKMMNVKDFEDYLHLSIQEAGIKLNLCPTVMKRVCRRDGLRRWPSRKINSI 306 688999*******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 14.971 | 246 | 326 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 8.4E-17 | 259 | 306 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 753 aa Download sequence Send to blast |
MDNFDTSIVP YHDPFDDNIL TGLNFSLFDD ENPTIDGDIN YQVPINLNPT IVGGDNNNHQ 60 GPPINENKTN LNYSLSFPDY DPYLLEISFD SGDGFIGGST NPEGEVPGNN NCQILREIIH 120 DNGMILSKIG IFGTIGRISH AIVEKSTMDD HMSSDTIDFS NDSISKVKEF LVQYFEGCKK 180 DGYIVLEDTL SEFYQTLSVN SGVRTNDINN LLQLSTTNLH HNVLTEQQGM ANENEGTNSG 240 VNRGKISLSE QQRRRTKMMN VKDFEDYLHL SIQEAGIKLN LCPTVMKRVC RRDGLRRWPS 300 RKINSIKRKI SKRQESLNSI HAGERKSAKA DIAKLEKELA AIYNDLTYSL TKRVHQCLIY 360 MKLLRLLKKY YCSIFKKKMA SVEKVVGVKK VRQKDSDGWD VSMPLPGDII EGVAELASDD 420 DSFIQAKAWS ELTLFLGKIA GHFIWFKVRR GESTLKLKGY VLVERRSNLQ KRFVVRAASD 480 ERHLAVIAEL TLGRCTELQE MSRRMVNSGS RGYNQMGLQY DWKMKVGTYL PDSHSTVVSS 540 IVFMPLTREY RVEATLVRTM AWFSAAVSSG IPLVFVNIQT EQINNLERRN TSGKDVCSRQ 600 LDGYVGYHQS AQGVRLWYLP GIEEVPLELT PEPGESRFGI DIKRTDEGFV SIYSVAKGTA 660 AERAGLVHLF EEANKSKHHV VISRLEGKSV LPSTVSSEGL IYCCDHADIK DTLDLAMERS 720 ESIRLHIMSW PNQITQNTTG LFGAAAALMP PN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g062200.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009518 | 0.0 | Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0067I16, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010325012.1 | 0.0 | uncharacterized protein LOC104648819 | ||||
TrEMBL | A0A3Q7HPR4 | 0.0 | A0A3Q7HPR4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g062200.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3505 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64530.1 | 7e-08 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g062200.1.1 |
Publications ? help Back to Top | |||
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