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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc08g061140.2.1 |
| Common Name | LOC101262135 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
HB-other |
| Protein Properties |
Length: 336aa MW: 37905.9 Da PI: 4.9095 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc08g061140.2.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 30.5 | 6.2e-10 | 270 | 317 | 6 | 53 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53
+++k qle+Le+++++++ p+ +++ + + ++L+ r+V WF rR
Solyc08g061140.2.1 270 RLKKVQLETLEQVYRRSKRPTNAMISSIVHVTNLPRRRVLKWFEERRS 317
57899******************************************7 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0002229 | Biological Process | defense response to oomycetes |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009682 | Biological Process | induced systemic resistance |
| GO:0009787 | Biological Process | regulation of abscisic acid-activated signaling pathway |
| GO:0010118 | Biological Process | stomatal movement |
| GO:0050832 | Biological Process | defense response to fungus |
| GO:2000022 | Biological Process | regulation of jasmonic acid mediated signaling pathway |
| GO:2000071 | Biological Process | regulation of defense response by callose deposition |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MASSSTTLGI SIRLGCSSNE HLMLVHPRSR TNIALLFHSY SSRLVTFSRR RNNSAITSSN 60
KKKKSPPRKD TEEVGDIDED AFEALFQLLE EDLKNDELSL DDDDITEEDL AKLERELEEA 120
LKDDELLGEI DSIANENTES SMAKDEEAVA EDANGDDDDE DVDMLVKLKN WQLKKLAYAL 180
KKGRRKLNIK NLAADLCLDR AVVLEMLRNP PPNLVLLSAA LPDEPVPRML EAASKPLETV 240
PIEMSDAVKP DAKVETPVHV MQSNWSAQKR LKKVQLETLE QVYRRSKRPT NAMISSIVHV 300
TNLPRRRVLK WFEERRSEEG VPAHRLPYQP SSISE*
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| Nucleic Localization
Signal ? help
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| No. |
Start |
End |
Sequence |
| 1 | 48 | 63 | RRRNNSAITSSNKKKK |
| 2 | 179 | 186 | LKKGRRKL |
| Functional Description ? help
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| Source |
Description |
| UniProt | May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP009265 | 0.0 | Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0027D09, complete sequence |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - García-Andrade J,Ramírez V,López A,Vera P
Mediated plastid RNA editing in plant immunity.
PLoS Pathog., 2013. 9(10): p. e1003713
[PMID:24204264] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina.
Plant J., 2014. 78(2): p. 227-40
[PMID:24506441]
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