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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g013900.2.1 | ||||||||
Common Name | LOC101246738 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Nin-like | ||||||||
Protein Properties | Length: 962aa MW: 106150 Da PI: 5.351 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 89.1 | 3.6e-28 | 556 | 607 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++k+AA+++gvc+T+LKriCRqyGI+RWP+Rki+++ Solyc08g013900.2.1 556 AEKHVSLSVLQQYFSGSLKNAAQSIGVCPTTLKRICRQYGISRWPSRKISKV 607 5899*********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.768 | 539 | 627 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.1E-24 | 560 | 607 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 2.16E-19 | 853 | 946 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 2.7E-22 | 858 | 940 | No hit | No description |
PROSITE profile | PS51745 | 18.934 | 861 | 943 | IPR000270 | PB1 domain |
SMART | SM00666 | 1.2E-19 | 861 | 943 | IPR000270 | PB1 domain |
Pfam | PF00564 | 1.8E-15 | 862 | 942 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 962 aa Download sequence Send to blast |
MENGIGFWAS PRCSYIDDNV MEIMNLDTCA GIEQIFASYP TFSPINPMSI DYAPFEEQNT 60 ETFPCEGVNL MFQQNDDQFC FVESSEEADL VVETGMGKNS SKQNYVTHIV EKCVIPKSPC 120 QSLAERMLKA LELFKKSSGE GILAQVWVPM KSGDQYILST YEQPFLLDQV LSGYREVSRK 180 FTFDLEMKPG SCPGLPGRVF TSRIPEWTSN VMYYKEAEYL RVQYAVDHEV RGSIALPILE 240 DEEYDTLCCA VLELVTVKER PNFDLETSHV CQALQAVNLR STTPTQFSSQ SLSKNQRAAL 300 AEVKDVLRAV CHAHRLPLAL TWIPRSRGGG GDEIRAHARE SIASLDEKSV LCVENTACYV 360 SDKEMQGFLH ACMGHDLEEG QGIVGKSLQS NHPFFYPDVK EYHINEYPLV HHARKFGLNA 420 AVAIRLRSIL TGDDDYVLEF FLPVDMEGST EQQLLLNNLS RTMQRICRSL RTLSDAELIG 480 EGGEKCGLQS ESVLSPPPID LSRKSSQQSL LNSTLDLSKA PIDVCDSERA GIEANISHKQ 540 TPSVSRKRTE KKRSAAEKHV SLSVLQQYFS GSLKNAAQSI GVCPTTLKRI CRQYGISRWP 600 SRKISKVNRS LVKIRTVLQS VQGIEGGLKF DTVTGGIVAA TSILQDFDSQ KSMLSPCKDV 660 SIKSSEFLFQ DAVSALQTSC IDNHDSLVKM EEDLNVDGNQ LPESSHFGPS SFRVGDKPNS 720 LLSGVCHGSK LAALDRRSSL PANPDTMPRT SSGNVSLDSF HTKGGWRSCG LNTSNLKLDN 780 SGCHFISLCP DSMAKTDDIE EKMKGSIEVD GDDGVMEHHK VSSSGVTDLS NTSRSTMNGS 840 SSSSHSSGER KHTTAEDGGS QITVKASYVK DKIRFKFEPS AGCFQLYEEV AKRFKLQIGT 900 FQLHYLDDEE EWVMLVNDAD LNECLEILDI LGTRNVKFLV QDVSGTVGSS GSSNCFLTNG 960 S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g013900.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004244743.1 | 0.0 | protein NLP9-like | ||||
Swissprot | O22864 | 0.0 | NLP8_ARATH; Protein NLP8 | ||||
TrEMBL | A0A3Q7HLJ0 | 0.0 | A0A3Q7HLJ0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g013900.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3981 | 24 | 45 |
Representative plant | OGRP299 | 16 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g013900.2.1 |
Entrez Gene | 101246738 |
Publications ? help Back to Top | |||
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