PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 320aa MW: 36221.6 Da PI: 9.8394

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g008480.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.2	2.1e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+t Ed+ll +++k+ G g+W+ +++ g+ R++k+c++rw +yl Solyc08g008480.2.1 14 KGPWSTNEDLLLTNYIKENGEGQWRNLPNKAGLLRCGKSCRLRWMNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	53.4	6.1e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++ Solyc08g008480.2.1 67 RGNFSQDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-21	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.378	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	8.59E-28	11	108	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-10	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-12	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.68E-7	16	61	No hit	No description
PROSITE profile	PS51294	25.508	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-25	65	116	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-15	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	9.40E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MGRAPCCAKE GLRKGPWSTN EDLLLTNYIK ENGEGQWRNL PNKAGLLRCG KSCRLRWMNY 60 LRPGIKRGNF SQDEEDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HVIKKLKIAG 120 IQPKLHKVHK VSPKKEPKKK PKTENPRKKQ DKKKKNNKKK DQSLDTPQVV FVPKPIRISC 180 GLLRNSSVED VALLSTSSSP KMSPQTSQVL KKDTISEGSD IHLSAFLKSS SNMISPSDSY 240 EEGDNNSKKI NAITNDDENV EGKIKEVSFM PFASNLLFDE VLLDGFCDLS NESMLEKVYE 300 EYLQLISEKC YNQDAPMLM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-24	12	116	5	108	B-MYB
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	142	PKKKPKT
2	136	154	PKKKPKTENPRKKQDKKKK
3	137	148	KKKPKTENPRKK
4	137	154	KKKPKTENPRKKQDKKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g008480.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004244728.1	0.0	transcription factor MYB20-like
TrEMBL	M1A577	0.0	M1A577_SOLTU; Uncharacterized protein
STRING	Solyc08g008480.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	4e-63	myb domain protein 5

Link Out ? help Back to Top
Phytozome	Solyc08g008480.2.1
Entrez Gene	101264349

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]