PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Nin-like

Protein Properties

Length: 1009aa MW: 109784 Da PI: 5.9347

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g008410.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.3e-29	601	652	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Solyc08g008410.2.1 601 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 652 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.643	589	672	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-26	604	652	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.27E-20	912	998	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.2E-21	913	994	No hit	No description
SMART	SM00666	2.3E-23	913	995	IPR000270	PB1 domain
PROSITE profile	PS51745	21.745	913	995	IPR000270	PB1 domain
Pfam	PF00564	1.2E-16	914	994	IPR000270	PB1 domain
CDD	cd06407	1.20E-31	914	994	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1009 aa Download sequence Send to blast
MSEPGGGMTQ NHLPKSKELT PATVTERESM MMDLDFDIDA SWSFDQIFAA AAAVSSNPAS 60 PFLPCSPLWA FPDDNDEKPA GNGLSGALRI SGHPRFVAYT GDLEATTETI SVNTDKGRLT 120 SPISGLLPGD NPEGSCIIKE RMTQALRYLK ETSGERVLAQ VWAPVKEAGR SVLTTSGQPF 180 VLDPECNGLH QYRTVSLMYM FAADGETDGV LGLPGRVFRL KLPEWTPNVQ YYSSKEFPRL 240 DHALNYNVRG TLALPVFEPS GRSCVGVLEL IMTSQKINYA AEVDKVCKAL EAVNLKSSDI 300 LDHPNTQVYV MGYMNQICNE GRQNALVDIL EILTAVCETY KLPLAQTWVP CRHRSVLADG 360 GGLRKSCSSF DGSCMGQICM STTDVAFYVV DAHMWGFRDA CAEHHLQRGQ GVAGRAYASR 420 KSCYCEDITQ FCKTEYPLVH YARMFGLTSC FAICLRSSHT ANDDYILEFF LPPNSGDYSD 480 QPALLNSLLL TMKQHFRSLS IASGEELEHD WGSVEIIQAS MEEKIDAKPE SVPTAKTSPQ 540 LTSLPNGWVH LDPVGEQQSA VGSNVSKGAR STSGTGEAPN NVSNSDNKTS GKKSERKRGK 600 AEKTISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK 660 CVIESVQGAE GAFTLTSLAP NSLPAAVSSI SWPAGANVSN LPSSPSSKPS VFPEEKNEFF 720 HHGTPESHIE AEPSNQMLGG RVARKEEFTP MQNGFLHAEG THKSRTGSVS REESAGTPTS 780 HGSCQGSPCA GNGFSPQNEL VNSPAHESCM KVGGSLEAAR QTTAEINLSS AFLMPQPIIP 840 KHTQEPFGGM LVEDAGSSHD LRNLCSPRDA LVDERVPDYN LTNPPFSDAI AKDPVYVPPD 900 TIQQYSAWPE VTSVTIKATY KEDIIRFRLC LSSGIVKLKE EVAKRLKLEL GTFYIKYLDD 960 DLEFVPISCD ADLQECVDIS RSSGSSIVRL LIHDIMSNLG SSCESSGK*

Sequence ? help Back to Top

Protein Sequence Length: 1009 aa Download sequence Send to blast

MSEPGGGMTQ NHLPKSKELT PATVTERESM MMDLDFDIDA SWSFDQIFAA AAAVSSNPAS  60
PFLPCSPLWA FPDDNDEKPA GNGLSGALRI SGHPRFVAYT GDLEATTETI SVNTDKGRLT  120
SPISGLLPGD NPEGSCIIKE RMTQALRYLK ETSGERVLAQ VWAPVKEAGR SVLTTSGQPF  180
VLDPECNGLH QYRTVSLMYM FAADGETDGV LGLPGRVFRL KLPEWTPNVQ YYSSKEFPRL  240
DHALNYNVRG TLALPVFEPS GRSCVGVLEL IMTSQKINYA AEVDKVCKAL EAVNLKSSDI  300
LDHPNTQVYV MGYMNQICNE GRQNALVDIL EILTAVCETY KLPLAQTWVP CRHRSVLADG  360
GGLRKSCSSF DGSCMGQICM STTDVAFYVV DAHMWGFRDA CAEHHLQRGQ GVAGRAYASR  420
KSCYCEDITQ FCKTEYPLVH YARMFGLTSC FAICLRSSHT ANDDYILEFF LPPNSGDYSD  480
QPALLNSLLL TMKQHFRSLS IASGEELEHD WGSVEIIQAS MEEKIDAKPE SVPTAKTSPQ  540
LTSLPNGWVH LDPVGEQQSA VGSNVSKGAR STSGTGEAPN NVSNSDNKTS GKKSERKRGK  600
AEKTISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK  660
CVIESVQGAE GAFTLTSLAP NSLPAAVSSI SWPAGANVSN LPSSPSSKPS VFPEEKNEFF  720
HHGTPESHIE AEPSNQMLGG RVARKEEFTP MQNGFLHAEG THKSRTGSVS REESAGTPTS  780
HGSCQGSPCA GNGFSPQNEL VNSPAHESCM KVGGSLEAAR QTTAEINLSS AFLMPQPIIP  840
KHTQEPFGGM LVEDAGSSHD LRNLCSPRDA LVDERVPDYN LTNPPFSDAI AKDPVYVPPD  900
TIQQYSAWPE VTSVTIKATY KEDIIRFRLC LSSGIVKLKE EVAKRLKLEL GTFYIKYLDD  960
DLEFVPISCD ADLQECVDIS RSSGSSIVRL LIHDIMSNLG SSCESSGK*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g008410.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004244640.1	0.0	protein NLP6-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A3Q7HL32	0.0	A0A3Q7HL32_SOLLC; Uncharacterized protein
STRING	Solyc08g008410.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Solyc08g008410.2.1
Entrez Gene	101261639

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]