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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc08g008380.2.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
ARF |
Protein Properties |
Length: 684aa MW: 76145.7 Da PI: 5.9306 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc08g008380.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 74.4 | 1.4e-23 | 131 | 231 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
f+kvlt sd++++g +++ +k+a+e+ + + ++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv++++L +gD++vF +
Solyc08g008380.2.1 131 FCKVLTASDTSTHGGFSILRKHANEClppldmtQ--ATPAQELVAKDLHGFEWHFKHIFRGQPRRHLLTTGWSTFVSSKRLVTGDSFVFLR 219
99****************************9544..444559************************************************5 PP
-SSSEE..EEEEE- CS
B3 85 dgrsefelvvkvfr 98
+ ++e +++++r
Solyc08g008380.2.1 220 S--GKGEVRIGIRR 231
4..68888999987 PP
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2 | Auxin_resp | 103.7 | 2.3e-34 | 257 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
a+ha++t+++F v+Y+Pr+ s+F++ ++k+++a+k+++svGmRfkm+fe+e+ +e+r++Gt+vgv+d ++++W++SkWrsLk
Solyc08g008380.2.1 257 ASHAVTTQTMFVVYYKPRT--SQFIIGLNKYLEAVKHRYSVGMRFKMKFEGEEIPEKRFTGTIVGVED-SSSQWKDSKWRSLK 336
789***************6..9**********************************************.555*********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 684 aa
Download sequence Send
to blast |
MENQGSFMSN QQHQQHNFLA EGEDELCQEL WRLCAGPLVD VPKNEERVYY FPQGHMEQLE 60 ASTNQELNQS IPLFNLQPKI LCRVLHIQLL AEQDSDEVYA QIALLPEADQ VEPTSPDLSL 120 PEPPRPKVHF FCKVLTASDT STHGGFSILR KHANECLPPL DMTQATPAQE LVAKDLHGFE 180 WHFKHIFRGQ PRRHLLTTGW STFVSSKRLV TGDSFVFLRS GKGEVRIGIR RLARQPSSMP 240 QSVISSQSMH LGVLATASHA VTTQTMFVVY YKPRTSQFII GLNKYLEAVK HRYSVGMRFK 300 MKFEGEEIPE KRFTGTIVGV EDSSSQWKDS KWRSLKVQWD EPASVPRPDR VSPWDIEPFV 360 ASVATPLVPP MGVKNKRHRA HNEPKSSEPV PAAALAAWIP SAQFNPVIEG QSSDNPFSLH 420 TSQTNSTATN STFKARVDGI WSASKVNASL NMLLDETEAS KSASPRPAFP SFASSQFGKQ 480 NDLLLPSLDD ERKCGTITSC RLFGIDLKCP SFGSVNENPP LEPANNSDGS AEGCSGNLTS 540 AGDSEDNSGL SRDSEDQKQE QLNPPPKEVH IKQVSSTRTR TKVQMQGVAV GRAVDLTKLN 600 GYDELLRELE ELFDIQEELH ARNKWEIVFT DDEGDMMLMG DYPWSEFCNI AKRIFICSSQ 660 DMKSFSAGTK SPSCLESETT AST*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ldv_A | 1e-172 | 24 | 359 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-172 | 24 | 359 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-172 | 24 | 359 | 17 | 355 | Auxin response factor 1 |
4ldx_A | 1e-172 | 24 | 359 | 17 | 355 | Auxin response factor 1 |
4ldx_B | 1e-172 | 24 | 359 | 17 | 355 | Auxin response factor 1 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HM565127 | 0.0 | Solanum lycopersicum auxin response factor 12 (ARF12) mRNA, complete cds |