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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc08g007820.1.1 |
Common Name | LOC104648613 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
ERF |
Protein Properties |
Length: 245aa MW: 27407.7 Da PI: 4.646 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc08g007820.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 49 | 100 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
+ y+GVr++ +++Wv+e+r+ps+ +kr++lg++ t+e+Aa+a++ a+++l+g+
Solyc08g007820.1.1 49 PVYRGVRRRN-NNKWVCELREPSQ---QKRIWLGTYSTPEMAARAHDVAALALRGN 100
68*****887.8*********954...5*************************995 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MNNDSSLYSS DINPLSATTP SNEEGILLLA SSQPKKRAGR KKFKETRHPV YRGVRRRNNN 60 KWVCELREPS QQKRIWLGTY STPEMAARAH DVAALALRGN LATLNFADSR WGLPVPASKD 120 PKDIRQAAVM AAQAFSQDTE LVGVDYMNEE VNSNTIDEIK YQEIDIARAN DGSSSDFGAK 180 ELCIDMENIL CCNWGEDNDM LEMEGWQEKM AKGLLFSPTP RLGSCFSWDD VESDVEVSLW 240 SYSI*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX847652 | 9e-14 | Solanum lycopersicum carboxylesterase 1 (CXE1) gene, complete cds |