|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Solyc08g007270.2.1 |
Common Name | LOC101262232 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
HD-ZIP |
Protein Properties |
Length: 276aa MW: 31459.8 Da PI: 8.4969 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc08g007270.2.1 | genome | ITAG | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 59.7 | 4.6e-19 | 112 | 166 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tk+q +Lee F+++++++ ++++ LAk+lgL rqV vWFqNrRa+ k
Solyc08g007270.2.1 112 RKKLRLTKDQSIVLEESFKEHNTLNPKQKQALAKRLGLRPRQVEVWFQNRRARTK 166
788899***********************************************98 PP
|
2 | HD-ZIP_I/II | 127.2 | 7e-41 | 112 | 201 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rl+k+q+ +LEesF+e+++L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL+kev+eLr +l
Solyc08g007270.2.1 112 RKKLRLTKDQSIVLEESFKEHNTLNPKQKQALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCENLTEENRRLQKEVQELR-AL 201
69*************************************************************************************9.55 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MLENQDLRLS LSLSFSENKT TNPLQLNSWI GSFPSSDRNL EKCRTFLKGI DVNIIPTNTE 60 EEVGVSSPNS SISSLSGNKR NEREIINCCD ELEIERECSR SISDEEDGET SRKKLRLTKD 120 QSIVLEESFK EHNTLNPKQK QALAKRLGLR PRQVEVWFQN RRARTKLKQT EVDCELLKRC 180 CENLTEENRR LQKEVQELRA LKLSPQLYMQ MTPPTTLTMC PSCERVAGPS AMSGPASIDI 240 RTNQMVLARQ RPVPFNLWTA SPVPHRPINT LHPRS*
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 110 | 116 | SRKKLRL |
2 | 160 | 168 | RRARTKLKQ |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP009288 | 0.0 | Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0270A17, complete sequence |