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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc08g006240.1.1 |
Common Name | LOC101252102 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
B3 |
Protein Properties |
Length: 505aa MW: 58982 Da PI: 9.786 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc08g006240.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 46 | 9.6e-15 | 11 | 95 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
l+p + + ++ l +p f+ ++ g++ ++ + + + g++W vk+ ++ + l++GWk+F+++n+L gD++vF+++g++ef v+
Solyc08g006240.1.1 11 LKPIHKGFKHGLKIPIGFL-KYlkGHD--QH-EHAILRSAGKTWLVKV--NGWR----LEEGWKKFANENDLHLGDMLVFRHEGDMEF--EVS 91
55667777888********.6655444..33.4555667*********..6666....9***********************999999..999 PP
EE-S CS
B3 96 vfrk 99
+f++
Solyc08g006240.1.1 92 IFDS 95
9986 PP
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2 | B3 | 53.7 | 3.7e-17 | 158 | 241 | 5 | 92 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
++++ +++ l+lpk+fa e+++ + ++ +++++de+ rsW+++l +++r+ l +GW+eF an+L++gD ++F+++ + ++++
Solyc08g006240.1.1 158 IVKPYCITHSYLRLPKHFAMENDIFN-KKCDVIIRDERQRSWKLRL--ATHDCRVHLLGGWREFRVANDLNVGDYMMFEVIAN-GEKP 241
5678999999************4432.3348***************..99999977888********************9875.3334 PP
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3 | B3 | 51.5 | 1.9e-16 | 281 | 363 | 6 | 92 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
++++ lk++ +lp+ fa+++g+++++ l+++de+ rsW++++ + ++ +++++kGW++F +n+LkegD ++F+++++ ++++
Solyc08g006240.1.1 281 VRPYCLKRNYYRLPRGFARANGLINTKC-GLVIRDERQRSWNLRI--DTYGYGVYIAKGWSKFRVENDLKEGDRMMFEVVSN-GEKP 363
6789999**************8887664.8999************..*******************************8874.4444 PP
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4 | B3 | 46.1 | 8.7e-15 | 391 | 473 | 6 | 89 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89
++++ l ++ l++p k a ++ + +++ +l+++d ++ rsW+vkl r ++++ +++GW+ F +an LkegD ++F+++++ ++
Solyc08g006240.1.1 391 IRPYCLVNDFLYIPTKIAHAYRLTNKKC-DLVIRDdRRERSWNVKL--RSFGNSVCIKGGWRVFRDANCLKEGDCIMFEVVSNgEN 473
6678888999***********7665444.6777775999*******..999999*************************8876343 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 505 aa
Download sequence Send
to blast |
MKIPPKKPQF LKPIHKGFKH GLKIPIGFLK YLKGHDQHEH AILRSAGKTW LVKVNGWRLE 60 EGWKKFANEN DLHLGDMLVF RHEGDMEFEV SIFDSSHCDR EYAEYLQQEA GFNNVEETCK 120 KFEFKGKSNL CIMSSGEALP YAEAATYNPC SRSHFECIVK PYCITHSYLR LPKHFAMEND 180 IFNKKCDVII RDERQRSWKL RLATHDCRVH LLGGWREFRV ANDLNVGDYM MFEVIANGEK 240 PIWKFRGDKP NANIVSTRKA FPKEEFATCS SFTQSHVECI VRPYCLKRNY YRLPRGFARA 300 NGLINTKCGL VIRDERQRSW NLRIDTYGYG VYIAKGWSKF RVENDLKEGD RMMFEVVSNG 360 EKPIWKFYGT NTNKNKNKNK PFAQSHFVCI IRPYCLVNDF LYIPTKIAHA YRLTNKKCDL 420 VIRDDRRERS WNVKLRSFGN SVCIKGGWRV FRDANCLKEG DCIMFEVVSN GENTTWKYNG 480 KISTKDHKKP IDKDNVKKLV MGKH*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP009283 | 1e-174 | Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence |