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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc08g006200.1.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
B3 |
Protein Properties |
Length: 567aa MW: 65675.8 Da PI: 7.723 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc08g006200.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 40.5 | 5e-13 | 20 | 95 | 14 | 99 |
T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
+ l +p f+ ++ g+ ++ l + g++W vk+ ++++ +++GW++Fv++++L+ g ++F+++g++ef v++f++
Solyc08g006200.1.1 20 DGLNIPIGFM-KYlRGQ--DYIKHALLKSAGKKWLVKV--NGRR----FKEGWRKFVEDHDLQLGYLLIFRHEGDMEF--DVSIFDS 95
56999****9.555555..4567899999*********..8887....9***********************999999..9999986 PP
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2 | B3 | 48.3 | 1.8e-15 | 193 | 266 | 11 | 86 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
++ g l++pk+ a ++g++++++ +l ++de+ rsW+vkl ++ ++++++GW++F + LkegD ++F+ +
Solyc08g006200.1.1 193 FSYGYLRIPKHAAFANGHVTNKKYDLLIRDEKQRSWNVKL--HSCQTQTYIGGGWRKFSADCCLKEGDRIIFEIVT 266
677899**********************************..999999*************************664 PP
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3 | B3 | 44.9 | 2e-14 | 327 | 412 | 6 | 96 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
++++ ++ +l +p fa+e+g++ ++ ++++de+ rsW +kl + +++++ W eF++an LkegD v+F++ ++ ++ lv+k+
Solyc08g006200.1.1 327 ITHSCISKYLLHVPTLFARENGLDRKC--RVKIRDEQQRSWMFKL--YVTAHNIFIGGIWHEFCSANFLKEGDRVMFEMFSK-GEGLVLKF 412
66777888899*************777..69999***********..888889*************************7664.33355555 PP
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4 | B3 | 55.6 | 9.7e-18 | 469 | 548 | 5 | 88 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
+++s++ +++ l+lp f+++ g+ +++ +++l+de+ rsW v+l +++ +r+v+tkG ++F kang+++gD+ F+l++++
Solyc08g006200.1.1 469 TIKSNTISRSVLYLPMAFIKSTGLMNRR--KIILTDEKQRSWPVQL--TQRVDRFVITKGFQKFMKANGVQVGDTYKFELIDDR 548
67899999**************988555..8***************..9999***************************99753 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 567 aa
Download sequence Send
to blast |
MKIPSKKSHF FKPILTGFMD GLNIPIGFMK YLRGQDYIKH ALLKSAGKKW LVKVNGRRFK 60 EGWRKFVEDH DLQLGYLLIF RHEGDMEFDV SIFDSTHCGR EYVEYLQVEQ EQKQRQQEEE 120 EEEEKEDDDD DEEEEEVEEV VHTTEETSMD FEFKEKSSSS IESSDEASSH SEASTDKSFG 180 HSRFICNITA CCFSYGYLRI PKHAAFANGH VTNKKYDLLI RDEKQRSWNV KLHSCQTQTY 240 IGGGWRKFSA DCCLKEGDRI IFEIVTGGET PIWKFQVVTD AKTPMRKFQE NATESPKPCV 300 MSSNKDLPDV EAAKDMPWSR PHFICTITHS CISKYLLHVP TLFARENGLD RKCRVKIRDE 360 QQRSWMFKLY VTAHNIFIGG IWHEFCSANF LKEGDRVMFE MFSKGEGLVL KFHDLRANAS 420 LQREQKKPNL DVKRVYTQGL RIEPSDVPAP KAQLPTPTSA NTNPHFIATI KSNTISRSVL 480 YLPMAFIKST GLMNRRKIIL TDEKQRSWPV QLTQRVDRFV ITKGFQKFMK ANGVQVGDTY 540 KFELIDDRTI HVVYFPCKYA VKDEKA*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP009283 | 0.0 | Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence |