|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Solyc08g005900.2.1 |
Common Name | LOC101253209 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
Trihelix |
Protein Properties |
Length: 327aa MW: 37790 Da PI: 9.0479 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc08g005900.2.1 | genome | ITAG | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 64.8 | 1.8e-20 | 53 | 135 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W+ qe+++ i++r e+e +++++k k lWe v++++ erg++rs++qCk+kw+ l +ryk ++++ ++ ++pyfd+l+
Solyc08g005900.2.1 53 WSTQETRDFIAIRGELEMEFSSAKrsNLKSLWEIVAARINERGYRRSAEQCKSKWKTLINRYKGKETSDPDN----GGQFPYFDELH 135
********************986522669************************************9999984....4469*****98 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MFGGSNEKLG PFTQRLMLPQ HPLHLLPGAG GSSGSGLGGD DEFPKRDERV PPWSTQETRD 60 FIAIRGELEM EFSSAKRSNL KSLWEIVAAR INERGYRRSA EQCKSKWKTL INRYKGKETS 120 DPDNGGQFPY FDELHALFSS NMNNVHRVPI ESEAGSQQAR KRPRGTSRDR SSEEISEDEE 180 GYACESDEVK LGRSNVAPKK KPEKEKRPRT SNAEKASRQA SFGSSINNNT GRAVDNIQEM 240 LKEFFQHQLR IEMQWRETTE KRAREREAFE QEWRSSMEKL ERDRMMIEQS WREREEQRRT 300 REETRAEKRD ALLTTLLNKL IGENHP*
|