PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 284aa MW: 32799.7 Da PI: 7.9964

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g005870.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.6	3.4e-14	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ll +++k++G g W++ +++ g+ R++k+c++rw +yl Solyc08g005870.1.1 14 KGSWTKKEDLLLTEYIKEYGEGtGWRSLPKKAGLLRCGKSCRLRWVNYL 62 799*****************99*****99**********97 PP
2	Myb_DNA-binding	53.9	4e-17	68	111	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T+eEd+l+v++ ++lG++ W++Ia +++ gRt++++k++w++ Solyc08g005870.1.1 68 RGTFTPEEDDLIVRLYTLLGSR-WSLIAGRIP-GRTDNDIKNYWNT 111 899*****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-20	5	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.096	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	5.14E-27	11	109	IPR009057	Homeodomain-like
SMART	SM00717	8.3E-11	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-13	14	62	IPR001005	SANT/Myb domain
CDD	cd00167	6.04E-7	16	62	No hit	No description
PROSITE profile	PS51294	22.902	63	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-23	66	118	IPR009057	Homeodomain-like
SMART	SM00717	9.8E-14	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	7.7E-15	68	111	IPR001005	SANT/Myb domain
CDD	cd00167	3.58E-9	70	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MGRKPCCSKE GLKKGSWTKK EDLLLTEYIK EYGEGTGWRS LPKKAGLLRC GKSCRLRWVN 60 YLKPGLNRGT FTPEEDDLIV RLYTLLGSRW SLIAGRIPGR TDNDIKNYWN TSLLKKLKAQ 120 GNEPREHKSQ AKKRRRKEEK ANVSSQINRK NNNENKKKMK KEKIVEKHNI EDEEATKIEE 180 QPHAQDFAQP VSDSNHNFTS SCSNQDGTSS STSSSEIHSS SQNTEYHNQD EIFEKLQVID 240 ELLLNDNCLF QPEKCIEFNN NENHMLFEEV YEEYFQLVSE NSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3zqc_A	1e-25	14	141	2	123	MYB3
3zqc_D	1e-25	14	141	2	123	MYB3
3zqc_G	1e-25	14	141	2	123	MYB3
3zqc_J	1e-25	14	141	2	123	MYB3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	136	KKRRRK
2	134	159	RRKEEKANVSSQINRKNNNENKKKMK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g005870.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009299	3e-11	Solanum lycopersicum genomic DNA, chromosome 8, clone: C08SLm0006K11, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004244688.1	0.0	myb-related protein 308-like
Swissprot	P81393	1e-58	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A3Q7HGY8	0.0	A0A3Q7HGY8_SOLLC; Uncharacterized protein
STRING	Solyc08g005870.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	3e-59	myb domain protein 3

Link Out ? help Back to Top
Phytozome	Solyc08g005870.1.1
Entrez Gene	101250614

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]