PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g005430.2.1 | ||||||||
Common Name | LOC101245679 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRF | ||||||||
Protein Properties | Length: 357aa MW: 39116.2 Da PI: 8.5474 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.8 | 2.1e-24 | 92 | 136 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ Solyc08g005430.2.1 92 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMHRGRNRSRKPVES 136 79****************************************986 PP | |||||||
2 | QLQ | 65.5 | 1.3e-22 | 31 | 66 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a++PvPp+L+++i++ Solyc08g005430.2.1 31 PFTAVQWQELEHQAMIYKYLVAGLPVPPDLVVPIRR 66 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.9E-13 | 30 | 66 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.4E-17 | 31 | 65 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.343 | 31 | 66 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.831 | 92 | 136 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.6E-21 | 93 | 135 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MSGTSTTSVV GVGLVGGGGE VGYNDYGFRP PFTAVQWQEL EHQAMIYKYL VAGLPVPPDL 60 VVPIRRSFDA ISARFFSHPS LGYCSYYGKK FDPEPGRCRR TDGKKWRCSK DAHPDSKYCE 120 RHMHRGRNRS RKPVESQTTS QSLSTSKSHT ATGSSNRSGS FQSNSSGSFQ NMPLYSVANS 180 DGISYGSTTT KLQMEPASYG ITNKEYRYGM APDVDDHNFM PVASTSVRGL GGTGSNTDNM 240 WRLMPSQDHS KANLKNDSQL LGSLPNPFEP VIESKQQPQH CFFSSDIDSP STVKQEPQHP 300 MRSFFDEWPT SKESWSNLDE GSGKNNFSTT QLSISIPNIS SGFSSRSASS PKCADA* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems (PubMed:27107174). Expressed in panicles (PubMed:26187814, PubMed:27250747, PubMed:27250749, PubMed:27107174). {ECO:0000269|PubMed:26187814, ECO:0000269|PubMed:27107174, ECO:0000269|PubMed:27250747, ECO:0000269|PubMed:27250749}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of meristematic function in leaves, stems and inflorescences (PubMed:24532604). Transcription activator that plays a regulatory role in grain development (PubMed:26187814, PubMed:27250747, PubMed:27250749, PubMed:26936408, PubMed:27107174). Positively regulates grain size by promoting cell division and expansion, leading to increased grain length and width (PubMed:26187814, PubMed:27250747, PubMed:27250749, PubMed:26936408, PubMed:27107174). Positively regulates the expression of genes promoting cell proliferation (PubMed:26187814, PubMed:26936408). Activates the expression of expansin genes to promote cell expansion and grain size (PubMed:27250747). May promote grain size by activating brassinosteroid responses (PubMed:27250747). Component of a network formed by the microRNA396 (miRNA396), the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation (Probable). Component of the miRNA396c-GRF4-GIF1 regulatory module that plays an important role in grain size determination (Probable) (PubMed:27250747, PubMed:27250749, PubMed:27107174). {ECO:0000269|PubMed:24532604, ECO:0000269|PubMed:26187814, ECO:0000269|PubMed:26936408, ECO:0000269|PubMed:27107174, ECO:0000269|PubMed:27250747, ECO:0000269|PubMed:27250749, ECO:0000305|PubMed:26187814, ECO:0000305|PubMed:27107174, ECO:0000305|PubMed:27250747, ECO:0000305|PubMed:27250749}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g005430.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: The microRNA396c negatively regulates GRF4 at the transcriptional level. {ECO:0000269|PubMed:26187814, ECO:0000269|PubMed:26936408, ECO:0000269|PubMed:27107174, ECO:0000269|PubMed:27250747}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009594 | 0.0 | Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0022E13, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010324483.1 | 0.0 | growth-regulating factor 4-like isoform X1 | ||||
Refseq | XP_019070921.1 | 0.0 | growth-regulating factor 4-like isoform X1 | ||||
Refseq | XP_019070922.1 | 0.0 | growth-regulating factor 4-like isoform X1 | ||||
Swissprot | Q6ZIK5 | 2e-85 | GRF4_ORYSJ; Growth-regulating factor 4 | ||||
TrEMBL | A0A3Q7IDJ0 | 0.0 | A0A3Q7IDJ0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g005430.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA743 | 23 | 84 |
Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 3e-49 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g005430.2.1 |
Entrez Gene | 101245679 |