PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g063970.2.1

Common Name

LOC101261138

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 428aa MW: 46560.2 Da PI: 9.0982

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g063970.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.3e-05	194	216	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F ++ L+ H + H Solyc07g063970.2.1 194 TCHKCGEQFGKWEALEEHHLSkH 216 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	195	216	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	6.19E-22	218	426	No hit	No description
Gene3D	G3DSA:3.90.228.10	7.4E-9	229	423	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MGEKKNMPAV WFTLKRSLHC KSGPSDVHDP KTRKELSTIL TKKGGGRSGC SRSIANLKDV 60 IHGSKRHLDK PPSCSPRSIG SSEFINPITH EVILSNSRCE LKITSFNGFQ ESGNGGGGGV 120 STNDGSTFVG TLRPGTPGPG GHPTMHYFNS GCRNTPTRRS TSFLVDKEGH TSSIASKTRY 180 SLDNDVNGTS SGVTCHKCGE QFGKWEALEE HHLSKHAVSE LLEGDSSRKI VEIICRSSWL 240 KSESQVGRIE RILKVHNTQK TLARFEEYRE MVKNKASKLP KKHPRCIADG NELLRFYGTT 300 LACGLGMNGS CCLCISDKCC VCRIIRNGFS TKKELKGGIG VFTTSTSGSA YECIEMSEDD 360 PSLRKALIVC RVVAGRVHRP LENIQEMAGQ TGFDSLAGKV GVYSNIEELY LLNPKALLPC 420 FVVICKA*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MGEKKNMPAV WFTLKRSLHC KSGPSDVHDP KTRKELSTIL TKKGGGRSGC SRSIANLKDV  60
IHGSKRHLDK PPSCSPRSIG SSEFINPITH EVILSNSRCE LKITSFNGFQ ESGNGGGGGV  120
STNDGSTFVG TLRPGTPGPG GHPTMHYFNS GCRNTPTRRS TSFLVDKEGH TSSIASKTRY  180
SLDNDVNGTS SGVTCHKCGE QFGKWEALEE HHLSKHAVSE LLEGDSSRKI VEIICRSSWL  240
KSESQVGRIE RILKVHNTQK TLARFEEYRE MVKNKASKLP KKHPRCIADG NELLRFYGTT  300
LACGLGMNGS CCLCISDKCC VCRIIRNGFS TKKELKGGIG VFTTSTSGSA YECIEMSEDD  360
PSLRKALIVC RVVAGRVHRP LENIQEMAGQ TGFDSLAGKV GVYSNIEELY LLNPKALLPC  420
FVVICKA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g063970.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004244163.1	0.0	uncharacterized protein LOC101261138
TrEMBL	A0A3Q7HF29	0.0	A0A3Q7HF29_SOLLC; Uncharacterized protein
STRING	Solyc07g063970.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2244	22	35
Representative plant	OGRP661	14	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-171	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Solyc07g063970.2.1
Entrez Gene	101261138

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]