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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc07g063940.1.1 |
| Common Name | GRAS2 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
GRAS |
| Protein Properties |
Length: 584aa MW: 64966.4 Da PI: 6.2823 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc07g063940.1.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 414.9 | 7.2e-127 | 213 | 582 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
l+elL++cA+a+++++l ++l+a+ + +s +gdp+qRl ay++e+L ar s++++y+al+++e + + l+++++++e++P+l
Solyc07g063940.1.1 213 LKELLIACARALAENNLDDFEKLIAKARSAVSITGDPIQRLGAYIVEGLVARKEASGTNIYRALRCKEPA---GWDLLSYMHILYEICPYL 300
5799*****************************************************************9...9***************** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
kf++++aN aI +a +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+ + + l +g++La + e++++p+ef++
Solyc07g063940.1.1 301 KFGYMAANGAIADACRNENRIHIIDFQIAQGTQWLTLLQALAARPSGAPYVRITGIDDPVSKyaRGDGLAVVGKKLAAISEKFNIPVEFHA 391
***********************************************************999999************************** PP
GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
v +++ ++L+v+pgEalaVn+ l lh+++desv+++++rde+L++vks sPkvv++veqe+++n+++F+ rf eal+yysa+f+s+
Solyc07g063940.1.1 392 -VPVFAPEVTRDMLDVRPGEALAVNFPLTLHHTPDESVDVTNPRDELLRMVKSFSPKVVTLVEQESNTNTAPFFPRFQEALDYYSAMFESI 481
.6888999*********************************************************************************** PP
GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
+++l r+ +eri+vE+++l+r+ivnv+aceg er+erhe l+kW+ r+++aGF+++pls+++++ +k+l+r ++ + y++ e++g+++lgW
Solyc07g063940.1.1 482 DVTLERDRKERINVEQHCLARDIVNVIACEGMERVERHELLGKWKLRFTMAGFHQYPLSSYVNSVIKSLMRCYS-EHYTLVEKDGAMLLGW 571
*********************************************************************99888.66************** PP
GRAS 363 kdrpLvsvSaW 373
k+r+L+s+SaW
Solyc07g063940.1.1 572 KKRNLISASAW 582
*********** PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 584 aa
Download sequence Send
to blast |
MESHNLYGYG ATDVNLPYSY SMTTTPSIPN RLLGILKFDS GNSPNSPFAN YNDPGTPTTL 60
SDSLEQHSST ENISGTSPCS NSSRDYNHYF CRPSPSPDIH HNNLLVYSGD NSLLQYANHS 120
HNMKHALLQL ETALMGPEEV TTSSPSAGEI QQPQASGGQR SGMWHQDGQV PYRIETQPSH 180
VSVFGISGDI IQSEEHHKPM VDYPSQGIPF GNLKELLIAC ARALAENNLD DFEKLIAKAR 240
SAVSITGDPI QRLGAYIVEG LVARKEASGT NIYRALRCKE PAGWDLLSYM HILYEICPYL 300
KFGYMAANGA IADACRNENR IHIIDFQIAQ GTQWLTLLQA LAARPSGAPY VRITGIDDPV 360
SKYARGDGLA VVGKKLAAIS EKFNIPVEFH AVPVFAPEVT RDMLDVRPGE ALAVNFPLTL 420
HHTPDESVDV TNPRDELLRM VKSFSPKVVT LVEQESNTNT APFFPRFQEA LDYYSAMFES 480
IDVTLERDRK ERINVEQHCL ARDIVNVIAC EGMERVERHE LLGKWKLRFT MAGFHQYPLS 540
SYVNSVIKSL MRCYSEHYTL VEKDGAMLLG WKKRNLISAS AWH*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
| Publications
? help Back to Top |
- Day RB, et al.
Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
Plant Mol. Biol., 2004. 54(2): p. 261-72
[PMID:15159627] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Huang G, et al.
A root-knot nematode secretory peptide functions as a ligand for a plant transcription factor.
Mol. Plant Microbe Interact., 2006. 19(5): p. 463-70
[PMID:16673933] - Mayrose M,Ekengren SK,Melech-Bonfil S,Martin GB,Sessa G
A novel link between tomato GRAS genes, plant disease resistance and mechanical stress response.
Mol. Plant Pathol., 2006. 7(6): p. 593-604
[PMID:20507472] - Li M, et al.
Silencing GRAS2 reduces fruit weight in tomato.
J Integr Plant Biol, 2018. 60(6): p. 498-513
[PMID:29359472]
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