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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc07g063410.2.1 |
| Common Name | JA2L |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
NAC |
| Protein Properties |
Length: 357aa MW: 40091.7 Da PI: 7.5851 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc07g063410.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.1 | 3e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrF Ptdeel+v+yL++kv+g++++l ++i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk
Solyc07g063410.2.1 14 LPPGFRFYPTDEELLVQYLCRKVAGHDFSL-QIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKV 103
79***************************9.89***************7777799************************************ PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
Solyc07g063410.2.1 104 ITT-DGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139
*99.999****************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MGVQEMDPLT QLSLPPGFRF YPTDEELLVQ YLCRKVAGHD FSLQIIAEID LYKFDPWVLP 60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITTDGRK VGIKKALVFY 120
IGKAPKGTKT NWIMHEYRLS EPTTKTGSSR LDDWVLCRIY KKNSGGQKSS CSDLQNKDIS 180
HASSSSSSSQ FDDMLESLPA IEDRYFSLPR VNSIRNFQQN DKINLQQLSS GNFDWAAMAG 240
LNSFPELRTG NQVPTPGNQT PVLINTNQYH NHNDNLNNFN EFFANSTALN FHGEVKFEGG 300
VDQEVESSVR AQRLNSVNPG FFQENSTGFS SSYTNSVPDP FGIRYPTQTV NMGFTG*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
| Function -- GeneRIF ? help
Back to Top |
- Molecular mechanisms by which JA2 (jasmonic acid2) and JA2L (JA2-like), two homologous NAC TFS in tomato, regulate P.s. tomato DC3000-triggered stomatal movement is different. JA2 regulates the expression of an abscisic acid biosynthetic gene. Jasmonic acid (JA) and coronatine(COR) activate JA2L expession, and genetic manipulation of JA2L revealed its positive role in JA/COR-mediated stomatal reopeneing.
[PMID: 25005917]
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| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Ouyang B, et al.
Identification of early salt stress response genes in tomato root by suppression subtractive hybridization and microarray analysis.
J. Exp. Bot., 2007. 58(3): p. 507-20
[PMID:17210988] - Tomato Genome Consortium
The tomato genome sequence provides insights into fleshy fruit evolution.
Nature, 2012. 485(7400): p. 635-41
[PMID:22660326] - Du M, et al.
Closely related NAC transcription factors of tomato differentially regulate stomatal closure and reopening during pathogen attack.
Plant Cell, 2014. 26(7): p. 3167-84
[PMID:25005917] - Du M, et al.
MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
Plant Cell, 2017. 29(8): p. 1883-1906
[PMID:28733419] - Liu Y, et al.
MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
Plant Cell, 2019. 31(1): p. 106-127
[PMID:30610166]
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