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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc07g062680.1.1 |
| Common Name | lanceolate |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
TCP |
| Protein Properties |
Length: 401aa MW: 43397.7 Da PI: 6.8442 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc07g062680.1.1 | genome | ITAG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 114.3 | 1.6e-35 | 28 | 168 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssa 82
+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++ s+ +a++++ e+++ ++
Solyc07g062680.1.1 28 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELpawkptigtaSAAAATNTNLEQEQAQK 118
79**************************************************************999988864322222222222222222 PP
TCP 83 snsssg...........................................k 89
+++ ++
Solyc07g062680.1.1 119 QQEDNNfafqqgnvslfdnvagpsskraiesntasflppslesdaiadtI 168
22222245666666666665555555555555555555555555554441 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009793 | Biological Process | embryo development ending in seed dormancy |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0045962 | Biological Process | positive regulation of development, heterochronic |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 401 aa
Download sequence Send
to blast |
MAETSRLGIR NTVGEIVEVQ GGHIVRSTGR KDRHSKVCTA KGPRDRRVRL SAHTAIQFYD 60
VQDRLGYDRP SKAVDWLIKK AKPAIDELAE LPAWKPTIGT ASAAAATNTN LEQEQAQKQQ 120
EDNNFAFQQG NVSLFDNVAG PSSKRAIESN TASFLPPSLE SDAIADTIKS FFPMGSSTSA 180
NSSAMQFHSF QEPHMLSRAN SQNQDLSLSL QFQDPILLHH QNQQAQHHNQ TNHREQEQVQ 240
GQAPAHFGGN TPLGFDTSGW SMHQRLRSWS DSREIGPGGS GGAVTGPGGY LFNSPPAPAL 300
LQQLFGQNQF FSQRGPLQSS NTSSVRAWMD PSAIAIASGD PSNHHQAALS MYPSTIPGYG 360
FASEVGGFSG FRIPARIQGE EEEHDGISDK PSSASSDSRH *
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledons during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
| Function -- GeneRIF ? help
Back to Top |
- Results imply that dynamic spatial and temporal leaf maturation, coordinated by LA-like genes, enables the formation of variable leaf forms. [LANCEOLATE]
[PMID: 21228002] - Manipulations in LANCEOLATE activity lead to altered expression of genes involved in gibberellin biosynthesis, degradation and response. [LA] [LANCEOLATE]
[PMID: 21771122] - The interaction between auxin, Entire and Lanceolate in tomato leaf development, was examined. Auxin and LANCEOLATE affect leaf shape in tomato via different developmental processes. [Lanceolate]
[PMID: 22902691] - Data show that APETALA1/fruitfull (AP1/FUL) MADS box genes AP1, TM4 and MBP7 were involved in tomato leaf development and are repressed by lanceolate (LA), which was regulated by miR319.
[PMID: 23771895]
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| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Ori N, et al.
Regulation of LANCEOLATE by miR319 is required for compound-leaf development in tomato.
Nat. Genet., 2007. 39(6): p. 787-91
[PMID:17486095] - Schommer C, et al.
Control of jasmonate biosynthesis and senescence by miR319 targets.
PLoS Biol., 2008. 6(9): p. e230
[PMID:18816164] - Shleizer-Burko S,Burko Y,Ben-Herzel O,Ori N
Dynamic growth program regulated by LANCEOLATE enables flexible leaf patterning.
Development, 2011. 138(4): p. 695-704
[PMID:21228002] - Yanai O,Shani E,Russ D,Ori N
Gibberellin partly mediates LANCEOLATE activity in tomato.
Plant J., 2011. 68(4): p. 571-82
[PMID:21771122] - Ben-Gera H,Ori N
Auxin and LANCEOLATE affect leaf shape in tomato via different developmental processes.
Plant Signal Behav, 2012. 7(10): p. 1255-7
[PMID:22902691] - Burko Y, et al.
A role for APETALA1/fruitfull transcription factors in tomato leaf development.
Plant Cell, 2013. 25(6): p. 2070-83
[PMID:23771895] - Ju Y, et al.
Arabidopsis JINGUBANG Is a Negative Regulator of Pollen Germination That Prevents Pollination in Moist Environments.
Plant Cell, 2016. 28(9): p. 2131-2146
[PMID:27468890] - Challa KR,Aggarwal P,Nath U
Activation of YUCCA5 by the Transcription Factor TCP4 Integrates Developmental and Environmental Signals to Promote Hypocotyl Elongation in Arabidopsis.
Plant Cell, 2016. 28(9): p. 2117-2130
[PMID:27597774] - Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth.
Elife, 2017.
[PMID:27710768] - Li J, et al.
RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis.
J. Exp. Bot., 2016. 67(22): p. 6473-6480
[PMID:27838638] - Sun X, et al.
Activation of secondary cell wall biosynthesis by miR319-targeted TCP4 transcription factor.
Plant Biotechnol. J., 2017. 15(10): p. 1284-1294
[PMID:28233945] - Kubota A, et al.
TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis.
PLoS Genet., 2017. 13(6): p. e1006856
[PMID:28628608] - Koyama T,Sato F,Ohme-Takagi M
Roles of miR319 and TCP Transcription Factors in Leaf Development.
Plant Physiol., 2017. 175(2): p. 874-885
[PMID:28842549] - Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
Plant Physiol., 2018. 176(2): p. 1694-1708
[PMID:29133375] - Vadde BVL,Challa KR,Nath U
The TCP4 transcription factor regulates trichome cell differentiation by directly activating GLABROUS INFLORESCENCE STEMS in Arabidopsis thaliana.
Plant J., 2018. 93(2): p. 259-269
[PMID:29165850] - Challa KR,Rath M,Nath U
The CIN-TCP transcription factors promote commitment to differentiation in Arabidopsis leaf pavement cells via both auxin-dependent and independent pathways.
PLoS Genet., 2019. 15(2): p. e1007988
[PMID:30742619]
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