PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g062050.2.1 | ||||||||
Common Name | LOC101252101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | STAT | ||||||||
Protein Properties | Length: 704aa MW: 79468.8 Da PI: 6.4034 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 179.2 | 6.1e-56 | 213 | 333 | 1 | 121 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipk 91 +dv+l++ +++p++ + evvasL+y+d+ ++vek+ da+a LL+sydG+e++s+drp+k++ GrasfklkisqLsskcdnrLfri+f+ip+ Solyc07g062050.2.1 213 IDVTLMDNFSRPMTEEAEVVASLVYSDDNTLVEKPVDADAALLTSYDGIEYASSDRPSKVISGRASFKLKISQLSSKCDNRLFRIRFDIPR 303 69***************************************************************************************** PP STAT 92 lkkypfleavskpirCisrsrntrsssltk 121 l kypfle++s+pirCisr+r+tr++sl+ Solyc07g062050.2.1 304 LGKYPFLEVFSRPIRCISRNRSTRATSLML 333 ************************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.200 | 1.6E-5 | 16 | 156 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF49899 | 9.01E-8 | 21 | 135 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF55550 | 2.77E-6 | 601 | 668 | IPR000980 | SH2 domain |
Gene3D | G3DSA:3.30.505.10 | 7.1E-5 | 601 | 664 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 9.529 | 605 | 703 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 704 aa Download sequence Send to blast |
MGVKDYSFLR DLQVEFKNYE VTNKFSLCFW LYLNEPSTLP STILYQEHPD VTSHAPFLLL 60 DDRKKILLFP SLISSHSNIT SWREVAHAIS ESEFPTKKWV HVGCEVTQDL LHLYFDGKIV 120 GEKCLTSSLS NDMGSDNSRI SLTCITGKNS QLDGYVHSSE LFPMLSTIEN HYVKDPPVQL 180 SIDSSSAYEI EEDSDGVWSI VGGKASCRRN FDIDVTLMDN FSRPMTEEAE VVASLVYSDD 240 NTLVEKPVDA DAALLTSYDG IEYASSDRPS KVISGRASFK LKISQLSSKC DNRLFRIRFD 300 IPRLGKYPFL EVFSRPIRCI SRNRSTRATS LMLKKSSLGI HLLNGSQSPV LDDGSYDRPC 360 IVREAKQSPS SKRVKLGQEK LCANFKDDFV LKQANGGSRS HSWTSEDNHA HQNSLVARPV 420 SHGGAENFSS DSENSETTNS PVDDLPNNRD PISDMVVFKY CLADLNERRL LLKEMAMTAK 480 EEELATFAER VSLFSGCSHH RHQISISKRL IEEGINCWNL ISNYNHHVLW ENLVSGLQEH 540 FLKMTFGRIR SLTHQDFNLL RRVSGCQDLV SQDNFEKLWC WLYPVAFTLS QQCISSLWGS 600 TSPVWIEGFI TKEEAESSLT ILGALQEPGT YILRFPTSRS WPHPDAGNLV VTYVGSDYTI 660 HHRLISLESI YSSGVKGTTI RPIQDMLLEQ PELRRLGRIV RSL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.23417 | 0.0 | fruit| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g062050.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210354 | 0.0 | Solanum lycopersicum chromosome 7 clone C07HBa0102J11, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004244305.1 | 0.0 | SH2 domain-containing protein A | ||||
TrEMBL | A0A3Q7HGF0 | 0.0 | A0A3Q7HGF0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g062050.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9394 | 23 | 25 |
Representative plant | OGRP5941 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17040.1 | 0.0 | SH2 domain protein A |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g062050.2.1 |
Entrez Gene | 101252101 |
Publications ? help Back to Top | |||
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