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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc07g055920.2.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MIKC_MADS |
Protein Properties |
Length: 268aa MW: 29940.5 Da PI: 9.554 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc07g055920.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 98.4 | 2.8e-31 | 36 | 85 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtf+kRrng+lKKA+ELSvLCdaev++i+fss+g+lyey+
Solyc07g055920.2.1 36 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYA 85
79***********************************************8 PP
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2 | K-box | 103.9 | 2.1e-34 | 103 | 195 | 3 | 95 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93
++s+ s++ea+++++qqe++kL+++i+ +q+ +R+++Ge L+sLs ++L++Le +Lek++ ++RskKnell+++ie +qk+e elq++n++
Solyc07g055920.2.1 103 STSTGSVSEANTQYYQQEASKLRRQIRDIQTYNRQIVGEALGSLSPRDLKNLEGKLEKAIGRVRSKKNELLFSEIELMQKREIELQNANMY 193
4556669************************************************************************************ PP
K-box 94 Lr 95
Lr
Solyc07g055920.2.1 194 LR 195
*8 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.0E-40 | 28 | 87 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.039 | 28 | 88 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-33 | 29 | 104 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 30 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-32 | 30 | 50 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.04E-42 | 33 | 105 | No hit | No description |
Pfam | PF00319 | 6.4E-26 | 37 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-32 | 50 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-32 | 65 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.8E-25 | 112 | 195 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.245 | 114 | 205 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MVFPINQELL VDESSSQLRK TSGGTGGGGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY 60 ELSVLCDAEV SLIVFSSRGR LYEYANNSVR ATIDRYKKHH ADSTSTGSVS EANTQYYQQE 120 ASKLRRQIRD IQTYNRQIVG EALGSLSPRD LKNLEGKLEK AIGRVRSKKN ELLFSEIELM 180 QKREIELQNA NMYLRIAEVE RAQEQMNLMP GGGGGGGGGG GGGSDHQYHH QPNYEDARNN 240 FLPVNLLEPN PHYSRRDNGD QTPLQLV*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|PubMed:11414613}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY098735 | 0.0 | Lycopersicon esculentum TAGL1 transcription factor mRNA, complete cds |
Publications
? help Back to Top |
- Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development. Plant Mol. Biol., 2001. 45(5): p. 541-53 [PMID:11414613] - Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]
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