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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g054980.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 468aa MW: 52170.6 Da PI: 10.1024 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.5 | 4.2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l +++++G +W+ +++ g+ R++k+c++rw ++l Solyc07g054980.1.1 14 KGTWTPEEDKKLEAYITKYGCWNWRQLPKYAGLARCGKSCRLRWMNHL 61 799*****************99************************96 PP | |||||||
2 | Myb_DNA-binding | 57.9 | 2.4e-18 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eEdel++++++qlG++ W++Ia +++ gR+++++k++w++ Solyc07g054980.1.1 67 RGNYTKEEDELILNLHAQLGNR-WSAIAIHLP-GRSDNEIKNHWHT 110 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.023 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.47E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.15E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.347 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-16 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.58E-13 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-25 | 69 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MVRTPGYDKN GRKKGTWTPE EDKKLEAYIT KYGCWNWRQL PKYAGLARCG KSCRLRWMNH 60 LRPNVKRGNY TKEEDELILN LHAQLGNRWS AIAIHLPGRS DNEIKNHWHT SLKKRANYNS 120 SEGSKKCNNK NSGSNTKRKS SVENRNAISA NNNSNMHENI VLESSDWSPK ESSSEELSSY 180 QHEQHKVVQQ ELALEEISSG NFWTEPFEVD SFINRKIDFV APSIDYYGLM CPPSPYIALC 240 SEAHYPTLPP RPRSAVLRGP LPYPTPPTTL PPGPRSATLR GPLPYPTLPY PPDLGAPCSE 300 AHYPTPRTSE RHAPRPPTPP HYPTPRTSER RAPRPPTLPH YSTPRTSEHR APRPPAHPPT 360 TPYRPDLGAP RSEAPYPPAH YPLPPGPRSA ALRGPLPPVH YPLPPGPLSA ALRGPLPPAH 420 YPPDLGASRS EAPYPPPTTP LPPGPRSAAL RGPLPPGPSE RRAPRPRX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 14 | 117 | 7 | 109 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.8960 | 1e-75 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 5604381 | 1e-75 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g054980.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019070294.1 | 1e-179 | transcription factor MYB14-like | ||||
TrEMBL | A0A3Q7I9M1 | 1e-177 | A0A3Q7I9M1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g054980.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 3e-49 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g054980.1.1 |
Publications ? help Back to Top | |||
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