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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc07g054380.1.1 |
Common Name | LOC101262734 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
HD-ZIP |
Protein Properties |
Length: 208aa MW: 23593 Da PI: 10.1933 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc07g054380.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 58.9 | 8.2e-19 | 67 | 121 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq + Le+ F+++ ++ +++eLA+kl+L+ rqV vWFqNrRa+ k
Solyc07g054380.1.1 67 RKKLRLTKEQSTLLEDSFKQHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTK 121
678899***********************************************98 PP
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2 | HD-ZIP_I/II | 113.9 | 9.7e-37 | 67 | 155 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
+kk+rl+keq++lLE+sF+++++L +K+ela +L+l+prqv+vWFqnrRARtk+kq+E+d+e++k+++++l++en+rL+ke +eLr+
Solyc07g054380.1.1 67 RKKLRLTKEQSTLLEDSFKQHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTKLKQTEVDCEFMKKWCQSLNDENNRLKKELQELRS 155
69*************************************************************************************94 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 208 aa
Download sequence Send
to blast |
MGNNSNEACD TRLTLGLATS DHHKKKITCL DLSIIPLHDT SKIDGSSSKT CKNYTKFNSE 60 SKKIGMRKKL RLTKEQSTLL EDSFKQHTTL AMGQKQELAA KLKLKPRQVE VWFQNRRART 120 KLKQTEVDCE FMKKWCQSLN DENNRLKKEL QELRSIKIDQ RAPTPTPFHL SKTRTLALCS 180 SCQKISGGDT DEKHETGLDD GLSKRAN*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 115 | 123 | RRARTKLKQ |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |