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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc07g054220.1.1 |
Common Name | LOC101264838 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
ERF |
Protein Properties |
Length: 391aa MW: 44437.9 Da PI: 5.3945 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc07g054220.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 59.2 | 1e-18 | 180 | 229 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+g
Solyc07g054220.1.1 180 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAYKLRG 229
59******9.**********955...5*************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010200 | Biological Process | response to chitin |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 391 aa
Download sequence Send
to blast |
MATPPEEPME FDDNTFERQQ RRPVFEEASM SNRRFKKIKS PERQSSVQQP FDHRNNPTPM 60 AFPPPPSSSR LVFPFAFDGT QQSMESSSPL GANAMPLFHP QQQNQQQMIS FSPQQCLYPP 120 YFAGELGPSQ NQQQMLRYWN ETLNLSPRGR MMMMSRLGQD NRGYFRPQQV QVQPISATKL 180 YRGVRQRHWG KWVAEIRLPR NRTRLWLGTF DTAEDAAMAY DREAYKLRGD NAKLNFPEHF 240 IGKDRGETST EANSSSITTH ESSLPEHNSE SLQLQTVNNE QLPPSPPPQP PPEGDNHDED 300 SGIGSSQVTT NSQSSELVWG DMAEAWFNAT GWGPGSPVWD DLDTNNNLMF SPNLHFGNFS 360 QQEPHDSDPH QHHDTNSDPS SPSCPMRPFF *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC215355 | 8e-06 | Solanum lycopersicum chromosome 2 clone C02HBa0012A12, complete sequence |
GenBank | AC233643 | 8e-06 | Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence |
GenBank | AC233695 | 8e-06 | Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence |