PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g053750.1.1 | ||||||||
Common Name | LOC101249100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 418aa MW: 46960.1 Da PI: 7.6865 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.2 | 6.6e-09 | 132 | 152 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G C++Gd+C FaHg Solyc07g053750.1.1 132 VCSEFRK-GNCSRGDNCEFAHG 152 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 6.44E-5 | 126 | 156 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-6 | 127 | 153 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.45 | 128 | 154 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-5 | 131 | 154 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.2E-7 | 132 | 152 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.258 | 162 | 186 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8 | 162 | 185 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MEGLCAELHH HKFHPSHQLY KKSLRDIDIP PRKLLSRRAT LSSIDHVVSD VQFMDSPKSE 60 SDAQFQKFLP YNSLDDDDDA DPYSSDHFRM YEFKVRRCTR SRSHDWTDCP FAHPGEKARR 120 RDPRRFHYSG TVCSEFRKGN CSRGDNCEFA HGVFECWLHP TRYRTEACKD GKNCKRKICF 180 FAHTPRQLRV LPPGCYESGS SPKNLNSEKK YRNLNHCCVF CHSVSASPTS TLIGMSHISP 240 PMSPSLSPPL SPANRNQFSS PISRYSERFG SVEASSSGMC QLDPSGLMSY KDALTELVSS 300 LEAMNVNHEP NSSAAASTHS HSVNFDGNLP WLDVNFNNSS YDDQQQFLLS PSTPSPSPIS 360 NSRTKFYARE FPSASPVSSS RLSFVEELNN NNGTNRFYSD NGLSGGPDLG WVNDLLT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g053750.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004243370.1 | 0.0 | zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | A0A3Q7I8Z8 | 0.0 | A0A3Q7I8Z8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g053750.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10595 | 21 | 25 |
Representative plant | OGRP1170 | 16 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 3e-77 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g053750.1.1 |
Entrez Gene | 101249100 |
Publications ? help Back to Top | |||
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