PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 226aa MW: 24087.2 Da PI: 9.7673

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g053740.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	67.7	2.2e-21	23	72	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAaka++aa+++++g Solyc07g053740.1.1 23 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDAAAREFRG 72 6******.******8...557***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.11E-22	23	81	IPR016177	DNA-binding domain
Pfam	PF00847	1.1E-14	23	72	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-32	23	80	IPR001471	AP2/ERF domain
CDD	cd00018	1.03E-19	23	80	No hit	No description
PROSITE profile	PS51032	24.197	23	80	IPR001471	AP2/ERF domain
SMART	SM00380	6.8E-39	23	86	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-11	24	35	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-11	46	62	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MAVKDKAVKG GNVKVNHGVK EVHYRGVRKR PWGRYAAEIR DPGKKSRVWL GTFDTAEEAA 60 KAYDAAAREF RGPKAKTNFP FPAEMNNVGN NNSQSPCGSS TVESSSGETV VHAPNTRHAP 120 LELDLTRRLG AAAEGGRGGV GYPILHQQPT VAVLPNGQPV LLFDSMWRPG VVSRPYQVVP 180 ATMEFAGVGA GVVTSVSDSS SVVEEKHYGK KGLDLDLNLA PPMEV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-21	23	81	2	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	2e-21	23	81	5	64	ATERF1
3gcc_A	2e-21	23	81	5	64	ATERF1
5wx9_A	1e-20	18	85	9	77	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.5571	0.0	callus\| flower\| fruit\| leaf\| root\| seed\| trichome

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, mostly in root tip, lateral root tips, cortex and vascular tissues. {ECO:0000269\|PubMed:10945353}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g053740.1.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269\|PubMed:10945353}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014169	0.0	Lycopersicon esculentum clone 133306F, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004243371.1	1e-165	ethylene-responsive transcription factor 4
Swissprot	Q9LW49	1e-104	ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBL	A0A3Q7HF92	1e-164	A0A3Q7HF92_SOLLC; Uncharacterized protein
STRING	Solyc07g053740.1.1	1e-165	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44210.1	1e-25	erf domain protein 9

Link Out ? help Back to Top
Phytozome	Solyc07g053740.1.1
Entrez Gene	101249381

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]