PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g053590.2.1
Common NameLOC101253916
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 272aa    MW: 30783.2 Da    PI: 9.7837
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g053590.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1072.3e-33401801128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                         lp+G++F+P+d+e++ e+L++kv+ +       +   +    +++   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++ 
  Solyc07g053590.2.1  40 LPAGVKFDPSDQEIL-EHLEAKVRLDAhklhplI---DefiqTLEGEnGICYTHPEKLP-GVAKDGLVRHFFHRPSKAYTTGTRKRRKVHt 125
                         799***********9.99****999884554332...122222333336**********.555556788******************7444 PP

                 NAM  80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              + +W++tgk+++v+  k++++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Solyc07g053590.2.1 126 diqgnETRWHKTGKTRPVVL-KNKVKGHKKILVLYtnYGKQRKPEKTNWVMHQYHL 180
                         45455888************.8899**********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-3835199IPR003441NAC domain
PROSITE profilePS5100532.3840199IPR003441NAC domain
PfamPF023654.8E-1541180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MTCINIDSLT SVTKIIRTCP SCGHLIKYEE KAGIHNLPGL PAGVKFDPSD QEILEHLEAK  60
VRLDAHKLHP LIDEFIQTLE GENGICYTHP EKLPGVAKDG LVRHFFHRPS KAYTTGTRKR  120
RKVHTDIQGN ETRWHKTGKT RPVVLKNKVK GHKKILVLYT NYGKQRKPEK TNWVMHQYHL  180
GDNEDEKEGE LVVSKVFYQT QPRQCGGVNN NIKNNSCPPP LPQVRTSQVG SQFVQCFNPT  240
TLISFERNNP TMTTTSRLPN FNNLPDASFI P*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g053590.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103600.0Solanum lycopersicum chromosome 7 clone C07HBa0184G23, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243384.10.0NAC domain-containing protein 73
SwissprotO494591e-117NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A3Q7HF600.0A0A3Q7HF60_SOLLC; Uncharacterized protein
STRINGSolyc07g053590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-120NAC domain containing protein 73
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]