|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Solyc07g053570.2.1 |
Common Name | LOC101254916 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
C2H2 |
Protein Properties |
Length: 503aa MW: 55280.8 Da PI: 8.9851 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc07g053570.2.1 | genome | ITAG | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 15.6 | 4.5e-05 | 56 | 76 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C++Cgk F r nL+ H r H
Solyc07g053570.2.1 56 CEICGKGFQRDQNLQLHRRGH 76
*******************88 PP
|
2 | zf-C2H2 | 12.7 | 0.00037 | 130 | 152 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC +C+k++ +s+ k H +t+
Solyc07g053570.2.1 130 WKCDKCSKRYAVQSDWKAHSKTC 152
58*****************9998 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 503 aa
Download sequence Send
to blast |
MTEEVISNGF THDNSIEGSN PPPLKKKRNL PGNPDPEAEV IALSPKTLMA TNRFLCEICG 60 KGFQRDQNLQ LHRRGHNLPW KLKQRTSKEV RKRVYVCPEK VCVHHHPSRA LGDLTGIKKH 120 YCRKHGEKKW KCDKCSKRYA VQSDWKAHSK TCGTREYRCD CGTIFSRRDS FVTHRAFCDA 180 LAEETARVTA ASNMHNPLAM ANNINYHFIG APLGPNMAQH FSSLFKPVSN NNNNNNNNEN 240 SDPMRRNQLS LWNNIGVAQE QDQIGININN LREIHQINPL LHHTSAPAPA PVYDANTLLA 300 SSRSNAPPVS YNNNNHINWD QFIGSKTSPI NNAEQLSNTS SANISVPSLF SCQQQIALSS 360 PSANMSATAL LQKAAQIGAT TTTDPSIFLG NFSMNNCSNN NNNKNNDNNK FCGFYVSTPT 420 TNNSISNSLG SDVDQSSSVN DFSATIHPIQ MYPPPKRRHI QIEDSVKGVE VGAGGGAGGQ 480 TRDFLGVGVQ SICHPSSING LI*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in the ground tissue and stele cells of embryos and 2-days post-germination roots but not in the quiescent center (PubMed:17785527). Detected only in cells that perform asymmetric cell divisions (PubMed:17785527). In roots, present in cortex, endodermis, and pericycle layer (PubMed:25829440). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:25829440}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |