PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g053290.2.1
Common NameLOC101260837
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 256aa    MW: 27687.4 Da    PI: 8.4707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g053290.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-1362108354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN  + +Lr l+P        K++Ka+ L k++ +Ik+L
  Solyc07g053290.2.1  62 KNHSEAERRRRERINGHLGTLRNLIPGT-----NKMDKAALLAKVIGHIKEL 108
                         58*************************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.28159108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-1462112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1062108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.28E-462109No hitNo description
Gene3DG3DSA:4.10.280.105.2E-1463109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1165114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEFLSSFNGL NEVYGGFQGI IGNGLSSSSS LVLDNESGEL VKAMVKPGGK GVNPEKALIA  60
LKNHSEAERR RRERINGHLG TLRNLIPGTN KMDKAALLAK VIGHIKELRV NAAEATKGVL  120
VPTDIDEVKV EQQAEGSDGA TYSVKASLCC DYKHELISDL RQALDTLPLK TLRAEIATLG  180
SRMVSVFVIT EGNEGNTEGT ERCQLLITSV RQALRSVLDK FYASEEFSSR STLSSKRRRV  240
SLLNSSSSSS LGDFW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16772ERRRRE
2235239KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.154500.0flower| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g053290.2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243409.10.0transcription factor bHLH30
TrEMBLA0A3Q7HEZ90.0A0A3Q7HEZ9_SOLLC; Uncharacterized protein
STRINGSolyc07g053290.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA119892123
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-31bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]