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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc07g052760.1.1 |
Common Name | LOC101245562 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
GeBP |
Protein Properties |
Length: 383aa MW: 42923.4 Da PI: 6.8249 |
Description |
GeBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc07g052760.1.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF573 | 100.2 | 1.8e-31 | 140 | 231 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93
+++lws++D+++lL+G+ ++k+ +g++p +d++af+ef++++++++vsksql+eKi+rLKkKf ++ k ++ep+f k +d +f++sk
Solyc07g052760.1.1 140 PRSLWSDDDQLALLKGIAEYKTVKGMEPNADMTAFHEFIRGKLQVEVSKSQLSEKIKRLKKKFFTNAKG---DEEPVFMKGQDFLVFQHSK 227
6789*************************************************************9998...9****************** PP
DUF573 94 kiWg 97
+iWg
Solyc07g052760.1.1 228 RIWG 231
***8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 383 aa
Download sequence Send
to blast |
MAPKTKSRLV DQPPSASSSE EQELVEECQE EEEQQQQSRE ETEEEEEPPV VKRSITQKPV 60 KTAQKLQFSS ESDSENGSGS ESKKSDHSPP SPFVSDFTIK PIVSAPSKSA GKRPQEAQKE 120 KGRKKPKIAE EEDKKSAATP RSLWSDDDQL ALLKGIAEYK TVKGMEPNAD MTAFHEFIRG 180 KLQVEVSKSQ LSEKIKRLKK KFFTNAKGDE EPVFMKGQDF LVFQHSKRIW GAPGTSSGVK 240 EIVTNSTNGK AKKTVEAKKS SEPKKSGKVS KHKDDEEHKE EEKQVAVKEV VKEDIVKGDQ 300 QDFQSEYPRL AASFESMSGM FTIYPNGTSF LKEKMSLIAP DKAKVLEEKW KKLEDDEAAL 360 MVKRLDLIAE HYRLVVDAMR GN*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of tuber formation and persists throughout tuber development. {ECO:0000269|PubMed:12028578}. |
Uniprot | TISSUE SPECIFICITY: Expressed in tubers and in leaves treated with sucrose. {ECO:0000269|PubMed:12028578}. |
Functional Description ? help
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Source |
Description |
UniProt | May act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269|PubMed:12028578}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC253611 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-111k20 map 7, complete sequence |
GenBank | BT014165 | 0.0 | Lycopersicon esculentum clone 133289F, mRNA sequence |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT4G00390.1 | 4e-22 | DNA-binding storekeeper protein-related transcriptional regulator |