PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g052700.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 191aa MW: 21334.2 Da PI: 7.4119 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.1 | 8.7e-17 | 2 | 52 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+++ r+ +s+R+ i KK +EL v C+++v +++fs++g+l +yss Solyc07g052700.2.1 2 KKIEDSTSRKQFYSNRKDSIVKKSNELAVVCGTDVGLLMFSPSGQLTTYSS 52 68***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-11 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.49E-17 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.292 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-16 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-6 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-6 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MKKIEDSTSR KQFYSNRKDS IVKKSNELAV VCGTDVGLLM FSPSGQLTTY SSKESIEDIM 60 IEAMNKSVNP RPIPNLNEQL LMQSLKQSKS EGQMVGKIAI AEAHEKKLNE LKETLREAQQ 120 KIRYCNPQVE NISSVQEAEA YEQFLRSNME QIQQSKAKLL GVQGLVHRNE YPAVNTEDTA 180 AAGTSSGWMF * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.7348 | 0.0 | floral bud| fruit| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g052700.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243358 | 2e-41 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-30f7 map 1, complete sequence | |||
GenBank | AC246754 | 2e-41 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-59a11 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004243447.1 | 1e-139 | agamous-like MADS-box protein AGL66 | ||||
TrEMBL | A0A3Q7HBW8 | 1e-138 | A0A3Q7HBW8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g052700.2.1 | 1e-139 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5292 | 18 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 2e-19 | AGAMOUS-like 66 |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g052700.2.1 |
Publications ? help Back to Top | |||
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