PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 487aa MW: 53797.6 Da PI: 5.9794

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g052300.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.7e-16	20	67	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l d+vk++G g+W+++ r g+ R++k+c++rw ++l Solyc07g052300.2.1 20 KGPWTAGEDAILMDYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 67 79******************************************9986 PP
2	Myb_DNA-binding	52.7	9.5e-17	73	116	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++d++++lG++ W++ a+ ++ gRt++++k++w++ Solyc07g052300.2.1 73 KGAFTPEEERIIIDLHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 116 799*****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.532	15	67	IPR017930	Myb domain
SuperFamily	SSF46689	7.49E-30	18	114	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-12	19	69	IPR001005	SANT/Myb domain
Pfam	PF00249	7.1E-14	20	67	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-23	21	74	IPR009057	Homeodomain-like
CDD	cd00167	3.47E-10	22	67	No hit	No description
PROSITE profile	PS51294	26.204	68	122	IPR017930	Myb domain
SMART	SM00717	1.7E-16	72	120	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-15	73	116	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-25	75	121	IPR009057	Homeodomain-like
CDD	cd00167	5.29E-12	75	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0009789	Biological Process	positive regulation of abscisic acid-activated signaling pathway
GO:0043068	Biological Process	positive regulation of programmed cell death
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0090406	Cellular Component	pollen tube
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MAPDDRGTRN GGGTRQALKK GPWTAGEDAI LMDYVKKHGE GNWNAVQRNS GLMRCGKSCR 60 LRWANHLRPH LKKGAFTPEE ERIIIDLHAK LGNKWARMAA QLPGRTDNEI KNYWNTRLKR 120 RQRAGLPIYP QELQSQNQQE NNQPQSLISS PFDPQRATYN NPPPLSLLNV FNPSTMRPSI 180 THQFPLSSNA IFRDPPKGLP LTLPSTLRNS PLFSGSASMP NNNFGPTLSN LMPVSSFQQN 240 YPNFSFTTRP FMGIPSNQNE LMSGMGLSSI NYPSGPSVMT ASSCSDFGSS DANNYAHVEL 300 SQGNSGLLED LLKGTQNFPR STNIEENNSL DLNGKGKSLW QDYGLVGEEA RDHQDEAFLT 360 EESVYSFAHG GDVNLNNSSE SSSTDPNASS GIFLRKEGSL QGINQVDEHI MSLLNNFPLD 420 QEPVPNWYDE TDDKKMNSEI GADDHKAESL GEDSSKSQVA ITTTSGLKQH DWELGGCCWN 480 NMPPFC*

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MAPDDRGTRN GGGTRQALKK GPWTAGEDAI LMDYVKKHGE GNWNAVQRNS GLMRCGKSCR  60
LRWANHLRPH LKKGAFTPEE ERIIIDLHAK LGNKWARMAA QLPGRTDNEI KNYWNTRLKR  120
RQRAGLPIYP QELQSQNQQE NNQPQSLISS PFDPQRATYN NPPPLSLLNV FNPSTMRPSI  180
THQFPLSSNA IFRDPPKGLP LTLPSTLRNS PLFSGSASMP NNNFGPTLSN LMPVSSFQQN  240
YPNFSFTTRP FMGIPSNQNE LMSGMGLSSI NYPSGPSVMT ASSCSDFGSS DANNYAHVEL  300
SQGNSGLLED LLKGTQNFPR STNIEENNSL DLNGKGKSLW QDYGLVGEEA RDHQDEAFLT  360
EESVYSFAHG GDVNLNNSSE SSSTDPNASS GIFLRKEGSL QGINQVDEHI MSLLNNFPLD  420
QEPVPNWYDE TDDKKMNSEI GADDHKAESL GEDSSKSQVA ITTTSGLKQH DWELGGCCWN  480
NMPPFC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-30	18	121	5	107	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00287	DAP	Transfer from AT2G32460	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g052300.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004243474.1	0.0	transcription factor MYB101
TrEMBL	A0A3Q7HBJ4	0.0	A0A3Q7HBJ4_SOLLC; Uncharacterized protein
STRING	Solyc07g052300.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	1e-69	myb domain protein 101

Link Out ? help Back to Top
Phytozome	Solyc07g052300.2.1
Entrez Gene	101254917

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]