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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc07g047960.2.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 414aa MW: 45204.8 Da PI: 7.6279 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc07g047960.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 93.3 | 1.9e-29 | 138 | 195 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
+DgynWrKYGqK v+g+ef+rsYY+Ct +C +kk+vers+ d+++++i+Y +H+h+k
Solyc07g047960.2.1 138 EDGYNWRKYGQKLVRGNEFTRSYYKCTRLNCLAKKQVERSQ-DGHITNIHYIATHEHPK 195
7****************************************.***************85 PP
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2 | WRKY | 103.7 | 9.8e-33 | 314 | 372 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
++Dgy+WrKYGqK vkg+++prsYYrC+sagCp+kk+vers+++pk v+++Yeg+H+h+
Solyc07g047960.2.1 314 VNDGYRWRKYGQKFVKGNPNPRSYYRCSSAGCPAKKHVERSSHNPKSVITVYEGQHDHD 372
58********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 414 aa
Download sequence Send
to blast |
MSQSNQKDSS LSNVPEKDAE NVHQKKGLES EGGASESSRV SVLPKKEPYI ISCKSDSPVK 60 DGNISLVPGK ASDSSQQIQS QKMEEVVSQP HQEQVTSSPM AENALCKLQS RRNPDTSVQD 120 LPSDQGVTPF SEPEKPSEDG YNWRKYGQKL VRGNEFTRSY YKCTRLNCLA KKQVERSQDG 180 HITNIHYIAT HEHPKPLSSP QISPELVVPS ETRRPDMSTG TPHEGEKSTA LGEACQSIVP 240 SESLSSATVV SAGGSSQDTV LKPLKPGDEG DNNGGRNSKR RKKEVPTSDD MTPPMKSPSE 300 SRHIVQTSSE VDVVNDGYRW RKYGQKFVKG NPNPRSYYRC SSAGCPAKKH VERSSHNPKS 360 VITVYEGQHD HDIPPSRTVI QNTAEADSNT TRISGESTSE SGENKHVVHI GAS*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Qiao Z,Li CL,Zhang W
WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana. Plant Mol. Biol., 2016. 91(1-2): p. 53-65 [PMID:26820136] - Aamir M, et al.
Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach. Front Plant Sci, 2017. 8: p. 819 [PMID:28611792]
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