PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g042260.2.1 | ||||||||
Common Name | LOC100191131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARF | ||||||||
Protein Properties | Length: 1138aa MW: 127856 Da PI: 6.6348 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.5 | 5.1e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ ++W++++iyr++++r++lt+GW+ F ++++L++gD+v+F + Solyc07g042260.2.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldyaMQPPAQ--ELMARDLHDQTWTFRHIYRGQPKRHLLTTGWSVFISSKRLCAGDSVLFIR 214 99******************************5444444..8************************************************4 PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 +++ +l++++ r+ Solyc07g042260.2.1 215 --DEKSQLLLGIKRT 227 ..4666678888775 PP | |||||||
2 | Auxin_resp | 123.3 | 1.8e-40 | 252 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++ +vs+GmRf+m+fete+s rr++Gt++gvsdldp+rW+ S+Wr+L+ Solyc07g042260.2.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTITGVSDLDPIRWKSSQWRNLQ 334 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.76E-43 | 116 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-40 | 118 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.98E-18 | 125 | 226 | No hit | No description |
PROSITE profile | PS50863 | 12.026 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-20 | 126 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-22 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-35 | 252 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.0E-8 | 1001 | 1097 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 27.529 | 1011 | 1095 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.21E-9 | 1012 | 1089 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1138 aa Download sequence Send to blast |
MKAPSNGYLP NSGEGERKLM NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 TDGIPSYPNL PSKLICMLHN VTLHADTETD EVYAQMTLQP VNKYDQEALL LSEMGLKQNR 120 QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYAMQ PPAQELMARD LHDQTWTFRH 180 IYRGQPKRHL LTTGWSVFIS SKRLCAGDSV LFIRDEKSQL LLGIKRTNRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYAQV SLGMRFRMMF 300 ETEESGVRRY MGTITGVSDL DPIRWKSSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP 360 FYICPPPFFR PKFPKQPSFP GDESDIENVL KRGMPWINDE LGLKDAQNSI FPGLSLVQWM 420 SMQQNNHVPV AQSGLPSVLH SNIGSDDHSK LLNFQSPALA TPGLQFNKPN QLNQPFGQIQ 480 QPPLAWTQEQ QQSLQSPVSA QQQQQQQHTL QQQQQQQQHT LQQQQQQRHT LQQQQQQQTL 540 QQQQQQQQQQ HTLQQQQQQQ HTLQHQQQHT LQQPQQHMLQ QQPQFHQQAQ QQLQQQQRPS 600 QQQQLTGNSS PVNRCVSPNQ IPNQTFPQAA VYGQLQQQQV LSASTQSQQN VPVSRNSFPS 660 TSLAQDFQFQ QQMEQQSNLL QKSQQQQTIP QQAPLQLLQQ SLMQRSQVQP SSQQSLTEQQ 720 LQLQLLNKLQ QQQQQQQAQL LSPVSSTLEP RMPQQQQNRQ PQELQFAHQQ LSSNIVTTVT 780 HLQSTHHAFN QLQNHHKSPI TIKALSGGTE GDAPSCSTSP STNNFQVSPP NFLTRNQGQA 840 ILVDESVVDP SQEQNKSECR IKHELVFSKG SELSKYKGNN TENLEAASST TSYGLDSSGF 900 NFSLPALCVD GDVQSHSRNI LPSAANNIDG LNPDALLSRD YDSGKDIQNL FSPFGNAPRD 960 IETELSDAGI NSQQFGVPNM SYKPRCANDL AVNDNGILNN NAWTNQTQRM RTYTKVQKRG 1020 SVGRTIDVTR YIGYDELRHD LARMFGIEGQ LEDPQRTEWK LVYVDHENDI LLVGDDPWEE 1080 FVSCVQSIKI LSCAEVQQMS LNGDLGNVPV PNQASSGTDS GNAWKGHYDD NSAASFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-171 | 15 | 355 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.22486 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g042260.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF121545 | 0.0 | Solanum lycopersicum auxin response factor mRNA, partial cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004243692.1 | 0.0 | auxin response factor 7 isoform X1 | ||||
Swissprot | Q8RYC8 | 0.0 | ARFS_ARATH; Auxin response factor 19 | ||||
TrEMBL | B5SP99 | 0.0 | B5SP99_SOLLC; Auxin response factor (Fragment) | ||||
STRING | Solyc07g042260.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1302 | 24 | 65 |
Representative plant | OGRP9033 | 9 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g042260.2.1 |
Entrez Gene | 100191131 |