PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 168aa MW: 18769.2 Da PI: 8.485

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g042230.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.9	6.9e-20	16	65	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr +k +g+WvAe+r p++ r r++lg+++taeeAa+a++aa +l+g Solyc07g042230.1.1 16 RYKGVRMRK-WGKWVAEVRQPKS---RDRIWLGSYDTAEEAARAYDAAVVCLRG 65 69***99.***999854...4***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.09E-30	16	75	No hit	No description
Pfam	PF00847	1.5E-13	16	65	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.77E-22	16	74	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.393	16	73	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.3E-31	16	74	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-34	16	79	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-10	17	28	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-10	39	55	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MVRAKVKKEK KVKGDRYKGV RMRKWGKWVA EVRQPKSRDR IWLGSYDTAE EAARAYDAAV 60 VCLRGPSAMI NFPDDPPLIS CDADNYKLSP SEIQVKASRH ARSSSTRVSE ELAAAAATVV 120 VDHHHSRSAA VESVFFRDDL EFGCSSLDHG EVVLHDDLFD SARMWSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	8e-18	16	81	14	80	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.9924	0.0	fruit

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g042230.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY192369	6e-11	Lycopersicon esculentum ethylene response factor 3 (ERF3) mRNA, complete cds
GenBank	AY275554	6e-11	Lycopersicon esculentum ethylene response factor 2 mRNA, complete cds
GenBank	AY559314	6e-11	Lycopersicon esculentum ethylene response factor 3 (ERF3) mRNA, complete cds
GenBank	BT014126	6e-11	Lycopersicon esculentum clone 133235F, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004243693.1	1e-120	ethylene-responsive transcription factor ERF018-like
TrEMBL	A0A3Q7HBU8	1e-118	A0A3Q7HBU8_SOLLC; Uncharacterized protein
STRING	Solyc07g042230.1.1	1e-119	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G21960.1	2e-25	ERF family protein

Link Out ? help Back to Top
Phytozome	Solyc07g042230.1.1
Entrez Gene	101246841

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]