PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g041640.2.1 | ||||||||
Common Name | LOC101255511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRF | ||||||||
Protein Properties | Length: 345aa MW: 39590.1 Da PI: 9.0709 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.9 | 4.7e-25 | 78 | 121 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e Solyc07g041640.2.1 78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 121 79***************************************986 PP | |||||||
2 | QLQ | 57.9 | 3.1e-20 | 11 | 45 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yKy+++++PvP++Ll i+ Solyc07g041640.2.1 11 PFTANQWQELEHQALIYKYMVSGMPVPADLLYTIR 45 8*****************************97775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.8E-11 | 10 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.342 | 11 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.1E-15 | 11 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.941 | 78 | 122 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.1E-21 | 79 | 121 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MMSSTGRSRF PFTANQWQEL EHQALIYKYM VSGMPVPADL LYTIRRSLDS SLSSKLLIHQ 60 PHHIGWNCFQ MGFGKKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV 120 EIMTNNNTSS STTTRPIIPP TAIPISSINK NTNTCSPTSF SYLTSSSSST HEPHHNYPFH 180 YRPPQDHTPK FLFESPTTYS RSGMKEEVGE HVFFSSEASG TMRSTCGSNS IESDTWQLSP 240 LTMSSSPMKQ RTTYSPSQST AHSYLQLQSL NESSRQNYYY HNDVEKEDHQ PKKVMHHFFD 300 EWPPKDNKHS WLDSDDKFSG LSRTQLSISI PNPSQDLFIT TNEK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g041640.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004243717.1 | 0.0 | growth-regulating factor 1-like | ||||
TrEMBL | A0A3Q7H8B2 | 0.0 | A0A3Q7H8B2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g041640.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA743 | 23 | 84 |
Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-53 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g041640.2.1 |
Entrez Gene | 101255511 |
Publications ? help Back to Top | |||
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