PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HRT-like

Protein Properties

Length: 457aa MW: 51051.8 Da PI: 10.1247

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g021550.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	49.7	5.9e-16	272	302	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++GsvC r+P g+KRC+eHKGm++ Solyc07g021550.2.1 272 ICGVALGHGSVCIRPPKTGNKRCAEHKGMKV 302 8****************************97 PP
2	HRT-like	42.6	9.9e-14	330	359	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG+il+ G C r P + +KRC eHKG+R Solyc07g021550.2.1 330 ICGFILDSGASCARIPFQRNKRCMEHKGRR 359 8****************************9 PP
3	HRT-like	48.6	1.4e-15	419	449	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l+dGs+C+ qP gRKRCe HK mR+ Solyc07g021550.2.1 419 ICGVHLNDGSFCTSQPTVGRKRCEGHKCMRV 449 8*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MGAADKSFTR RLRREDCKRT KHDSSFSHWK ILVGPNDWED YLLGKEGTER YRTQNLPNCT 60 SCSGVYELGI AVSRRKAGRE ATRLDPDYIV PVYVGKSNNV RTRLQQYGRV GAHLENDYSN 120 SELHVGEIIS GPKRAGLFTE TFSRGFSIVY RWAPMNDNKD AERTEAQLLD KFDYAWNKGS 180 NGVRRHNAVL RKLDGISRKT HLPAFIRKLQ LSLEKQKGVR IKACEPLLLE NGSGFHDSFK 240 STNFLPQILK FGRSQPRIVS VNVGVNGDPN IICGVALGHG SVCIRPPKTG NKRCAEHKGM 300 KVNSVKSKLI AEGNGSTRPC VSIDEENSPI CGFILDSGAS CARIPFQRNK RCMEHKGRRN 360 RGSNSQPTTY KIGQWTHNPI LENRTSSSND CQHILSSKAG RQDSQDFSSS LIHQNYNVIC 420 GVHLNDGSFC TSQPTVGRKR CEGHKCMRVK EPISSN*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MGAADKSFTR RLRREDCKRT KHDSSFSHWK ILVGPNDWED YLLGKEGTER YRTQNLPNCT  60
SCSGVYELGI AVSRRKAGRE ATRLDPDYIV PVYVGKSNNV RTRLQQYGRV GAHLENDYSN  120
SELHVGEIIS GPKRAGLFTE TFSRGFSIVY RWAPMNDNKD AERTEAQLLD KFDYAWNKGS  180
NGVRRHNAVL RKLDGISRKT HLPAFIRKLQ LSLEKQKGVR IKACEPLLLE NGSGFHDSFK  240
STNFLPQILK FGRSQPRIVS VNVGVNGDPN IICGVALGHG SVCIRPPKTG NKRCAEHKGM  300
KVNSVKSKLI AEGNGSTRPC VSIDEENSPI CGFILDSGAS CARIPFQRNK RCMEHKGRRN  360
RGSNSQPTTY KIGQWTHNPI LENRTSSSND CQHILSSKAG RQDSQDFSSS LIHQNYNVIC  420
GVHLNDGSFC TSQPTVGRKR CEGHKCMRVK EPISSN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.23936	0.0	fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g021550.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004242942.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A3Q7HA30	0.0	A0A3Q7HA30_SOLLC; Uncharacterized protein
STRING	Solyc07g021550.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7741	23	30
Representative plant	OGRP5248	14	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	2e-84	effector of transcription2

Link Out ? help Back to Top
Phytozome	Solyc07g021550.2.1
Entrez Gene	101254007

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]