PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g016180.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARF | ||||||||
Protein Properties | Length: 1113aa MW: 123332 Da PI: 6.6278 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.9 | 6.7e-22 | 135 | 236 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F Solyc07g016180.2.1 135 FCKTLTASDTSTHGGFSVPRRSAEKIfppldySMQPPA-QELVARDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI-- 222 99*****************************9545444.38************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++++l+++++r+ Solyc07g016180.2.1 223 RDEKQQLLLGIRRA 236 5688889****997 PP | |||||||
2 | Auxin_resp | 119.5 | 2.6e-39 | 261 | 344 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ Solyc07g016180.2.1 261 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 344 79*******************************99879********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-43 | 125 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.5E-41 | 126 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.51E-18 | 134 | 226 | No hit | No description |
PROSITE profile | PS50863 | 11.829 | 135 | 237 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-19 | 135 | 236 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.8E-22 | 135 | 237 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-34 | 261 | 344 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 28.366 | 1001 | 1085 | IPR000270 | PB1 domain |
Pfam | PF02309 | 9.2E-7 | 1002 | 1086 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.18E-6 | 1017 | 1079 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1113 aa Download sequence Send to blast |
MKTPVNTAGV QQQHTVNGNP GEVEKKSINP ELWQACAGPL VNLPAAGTHV VYFPQGHSEQ 60 VAASMKKDVD AQIPNYPNLP SKLVCLLHNI TLHADPETDE VYAQMTLQPV PSFDKEALLR 120 SDLSMKANKP QTEFFCKTLT ASDTSTHGGF SVPRRSAEKI FPPLDYSMQP PAQELVARDL 180 HDNLWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP 240 TNLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAS PSEFVIPLAK YYKATYSSQV 300 SLGMRFRMMF ETEESGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERRNRVS 360 IWEIEPVTAP FFICPTPPFF RSKRPRLPGM PDDDCSDLDG LFKRTMPWLG DDFGMKDPQG 420 LPGLSLVQWM NMQQNPSLAN SMQPNYLHSL SGSVLQNVGG GADLSRQLCL PAPQLPQQNT 480 LQFGSQRPTQ QVQQLDQLQK IPTTTLSPAG SIMQPQQQLS DISQQPRQNL INQSVPTNHV 540 QAQLLQAQSL VQSQNVLQQQ QSFQNQLQRN LPQNLPQQQQ IMNQTQQQSF MQPQPSDPLN 600 QQLHFSDNQL QMQLLQKLQQ QSLLAQQSLL QQPSQLMPIQ DQQKHLDVSQ NFSRSLATSQ 660 MLDMSQTTSN STSLSQPQVA QQQMTINNSQ SNLRFAQPNQ HMKQQQQQQQ PGILPEIPGQ 720 VGQILPPTTN QLSANCSSFL TGAVGGGQSV VTDDIPSCST SPSTNNCQNV VQPIMNGRIH 780 RGTAAAEETT QSSLPLLSSS GLEAMSPNRN LVKDLQQKPD VKPSMNISKS QNHGFSTPQT 840 YLNNAVPQMD YLDSSSSATS VYFSQNDVQL QQTTNPMSFS SQAIVFRDSQ DGEVQGDPRH 900 SVAFGANMDN QLGISMMPDS LITNSLVGSR KDVSNNISSG GGMLSSYENP KDAQPELSSS 960 MVSQSFGVPD MAFNSIDSTI NEGSFMNRGA WAPPPQMPRM RTFTKVHKRG AVGRSIDIAR 1020 YSGYEELKQD LARRFGIEGQ LEDRQRIGWK LVYVDHENDV LLVGDDPWEE FVNCVRCIKI 1080 LSPQEVQQIS LDGDFGNNVQ NQACSSSDGG NV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-169 | 24 | 365 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.10065 | 0.0 | fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g016180.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM130544 | 0.0 | Solanum lycopersicum auxin response factor 19 (ARF19) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234740.2 | 0.0 | auxin response factor 19 | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A3Q7I248 | 0.0 | A0A3Q7I248_SOLLC; Auxin response factor | ||||
STRING | Solyc07g016180.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1302 | 24 | 65 |
Representative plant | OGRP4193 | 11 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g016180.2.1 |
Entrez Gene | 100498663 |
Publications ? help Back to Top | |||
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